Pre_GI: BLASTP Hits

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Query: NC_012808:4078459:4078459 Methylobacterium extorquens AM1, complete genome

Start: 4078459, End: 4080186, Length: 1728

Host Lineage: Methylobacterium extorquens; Methylobacterium; Methylobacteriaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: First isolated in 1960 in Oxford, England, as an airborne contaminant growing on methylamine. This strain can grow on methylamine or methanol, but not methane. This organism is capable of growth on one-carbon compounds such as methanol. Methanol is oxidized to formaldehyde which is then used metabolically to generate either energy or biomass. These bacteria are commonly found in the environment, especially associated with plants which produce methanol when metabolizing pectin during cell wall synthesis. At least 25 genes are required for this complex process of converting methanol to formaldehyde and this specialized metabolic pathway is of great interest.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015968:3301958:3309292330929233108211530Enterobacter asburiae LF7a chromosome, complete genometype III restriction protein res subunit6e-75281
NC_013892:3803278:3830629383062938322601632Xenorhabdus bovienii SS-2004 chromosome, complete genomehypothetical protein5e-74279
NC_007298:2856104:2890657289065728921711515Dechloromonas aromatica RCB, complete genomeHelicase, C-terminal:Type III restriction enzyme, res subunit:DEAD/DEAH box helicase, N-terminal3e-69263
NC_016845:2274500:2289429228942922910421614Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,putative helicase3e-68259
NC_020126:2381380:2400806240080624024431638Myxococcus stipitatus DSM 14675, complete genomeDEAD/DEAH box helicase2e-28127
NC_015428:1544728:1582470158247015838251356Lactobacillus buchneri NRRL B-30929 chromosome, complete genometype III restriction protein res subunit1e-27125
NC_010610:535790:5443845443845457301347Lactobacillus fermentum IFO 3956, complete genomephage helicase2e-27124
NC_013222:3098409:3117822311782231193121491Robiginitalea biformata HTCC2501, complete genomeputative helicase3e-27123
NC_012984:520000:5221505221505234091260Lactobacillus plantarum JDM1, complete genomeHelicase-like protein:Type III restriction enzyme, res subunit:DEAD/DEAH box helicase-like protein2e-26121
NC_017167:1648913:1791053179105317928701818Alicyclobacillus acidocaldarius subsp. acidocaldarius Tc-4-1type III restriction protein res subunit1e-25118
NC_013205:1123280:1143953114395311457761824Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446,type III restriction protein res subunit2e-25117
NC_013768:1260317:1271584127158412727261143Listeria monocytogenes 08-5923, complete genomephage DNA/RNA helicase2e-25117
NC_013766:1293144:1304880130488013060221143Listeria monocytogenes 08-5578 chromosome, complete genomephage DNA/RNA helicase2e-25117
NC_009256:3601080:3604951360495136066331683Burkholderia vietnamiensis G4 chromosome 1, complete sequencetype III restriction enzyme, res subunit4e-25116
NC_013205:526281:5456155456155474351821Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446,type III restriction protein res subunit1e-24114
NC_013892:2005480:200469220046922005483792Xenorhabdus bovienii SS-2004 chromosome, complete genomehypothetical protein2e-24114
NC_017167:2298962:2362062236206223638821821Alicyclobacillus acidocaldarius subsp. acidocaldarius Tc-4-1type III restriction protein res subunit3e-24113
NC_014033:1152994:1166084116608411675021419Prevotella ruminicola 23 chromosome, complete genometype III restriction-modification system subunit Res3e-23110
NC_015681:1558873:1568001156800115696801680Thermodesulfatator indicus DSM 15286 chromosome, complete genometype III restriction protein res subunit5e-23109
NC_007296:1012313:1021606102160610229731368Streptococcus pyogenes MGAS6180, complete genomephage DNA/RNA helicase2e-22107
NC_020453:1881904:1898985189898519009281944Agromonas oligotrophica S58 DNA, complete genometype III restriction enzyme1e-21105
NC_007432:548964:5546845546845560481365Streptococcus agalactiae A909, complete genomeprophage LambdaSa03, helicase, putative8e-22105
NC_003485:1061344:1077481107748110788481368Streptococcus pyogenes MGAS8232, complete genomehypothetical protein8e-22105
NC_008555:1204000:1219010121901012202661257Listeria welshimeri serovar 6b str. SLCC5334, complete genomephage DEAH-family helicase4e-21103
NC_008024:804157:8098988098988111271230Streptococcus pyogenes MGAS10750, complete genomephage DNA/RNA helicase5e-2099.8
NC_004606:877707:8868798868798881081230Streptococcus pyogenes SSI-1, complete genomeputative helicase1e-1998.6
NC_008021:531730:5372845372845385191236Streptococcus pyogenes MGAS9429, complete genomephage DNA/RNA helicase (DEAD/DEAH box family)1e-1998.2
NC_008024:548165:5537195537195549541236Streptococcus pyogenes MGAS10750, complete genomephage DNA/RNA helicase1e-1998.2
NC_008022:771767:7786317786317798601230Streptococcus pyogenes MGAS10270, complete genomephage DNA/RNA helicase2e-1997.4
NC_008576:3331825:3353272335327233544681197Magnetococcus sp. MC-1, complete genometype III restriction enzyme, res subunit5e-1996.7
NC_015164:4053765:4053765405376540561372373Bacteroides salanitronis DSM 18170 chromosome, complete genometype III restriction protein res subunit2e-1790.9
NC_009614:4918877:4945504494550449478582355Bacteroides vulgatus ATCC 8482 chromosome, complete genomehelicase6e-1789.4
NC_009614:3748950:3763744376374437660472304Bacteroides vulgatus ATCC 8482 chromosome, complete genomehelicase2e-1687.8
NC_009614:3081190:3096739309673930989942256Bacteroides vulgatus ATCC 8482 chromosome, complete genomehypothetical protein1e-1585.5
NC_014376:1472304:1478955147895514805381584Clostridium saccharolyticum WM1 chromosome, complete genometype III restriction protein res subunit2e-1584.3
NC_016001:1893685:1910408191040819119461539Flavobacterium branchiophilum, complete genomeputative DNA or RNA helicase8e-1582.4
NC_010572:5445081:5481972548197254867414770Streptomyces griseus subsp. griseus NBRC 13350, complete genomehypothetical protein2e-1481.3
NC_015601:627217:6340726340726356611590Erysipelothrix rhusiopathiae str. Fujisawa, complete genomeDNA/RNA helicase6e-1479.7
NC_011898:3824000:3853810385381038554201611Clostridium cellulolyticum H10, complete genometype III restriction protein res subunit6e-1479.7
NC_020064:3157656:3158630315863031603871758Serratia marcescens FGI94, complete genomeDNA/RNA helicase, superfamily II2e-1378.2
NC_014624:1675500:1676158167615816779691812Eubacterium limosum KIST612 chromosome, complete genomeDNA or RNA helicases of superfamily II2e-1377.4
NC_019902:3397170:3397170339717034012584089Thioalkalivibrio nitratireducens DSM 14787, complete genomeHelicase-related protein3e-1377
NC_003888:3111998:3118362311836231211992838Streptomyces coelicolor A3(2), complete genomehelicase7e-1375.9
NC_013971:2408522:2409415240941524111691755Erwinia amylovora ATCC 49946 chromosome, complete genomeDNA helicase9e-1375.9
NC_013961:2370994:2371887237188723736411755Erwinia amylovora, complete genomeUncharacterized protein yejH9e-1375.9
NC_002737:533291:5375715375715391541584Streptococcus pyogenes M1 GAS, complete genomeputative DEAD box family helicase, phage associated1e-1275.1
NC_011295:1263500:1270521127052112727672247Coprothermobacter proteolyticus DSM 5265, complete genometype I restriction-modification system, R subunit2e-1274.7
NC_013967:2103968:2126758212675821289802223Haloferax volcanii DS2 chromosome, complete genometype I restriction-modification system restriction subunit2e-1274.7
NC_016816:1545354:1576845157684515785991755Pantoea ananatis LMG 5342, complete genomeATP-dependent helicase2e-1274.7
NC_010524:4788753:4798140479814048013163177Leptothrix cholodnii SP-6, complete genometype III restriction protein res subunit2e-1274.3
NC_003155:6295078:6305198630519863081192922Streptomyces avermitilis MA-4680, complete genomeATP-dependent helicase2e-1274.3
NC_006511:682863:7048127048127065721761Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCputative helicase5e-1273.2
NC_011147:682897:7047587047587065181761Salmonella enterica subsp. enterica serovar Paratyphi A strhelicase5e-1273.2
NC_014618:1593360:1609002160900216107621761Enterobacter cloacae SCF1 chromosome, complete genometype III restriction protein res subunit6e-1272.8
NC_015566:3622385:3622385362238536241421758Serratia sp. AS12 chromosome, complete genometype III restriction protein res subunit6e-1272.8
NC_016863:2324293:2324293232429323260531761Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative ATP-dependent helicase8e-1272.4
NC_010102:683444:7195017195017212611761Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein9e-1272.4
NC_010803:1436397:1441999144199914449022904Chlorobium limicola DSM 245, complete genometype III restriction protein res subunit3e-1170.9
NC_012917:1840172:1885051188505118868111761Pectobacterium carotovorum subsp. carotovorum PC1, complete genometype III restriction protein res subunit2e-1170.9
NC_013595:9651019:9660987966098796640733087Streptosporangium roseum DSM 43021, complete genometype III restriction enzyme, res subunit3e-1170.5
NC_018866:2484500:2497712249771224994751764Dehalobacter sp. DCA chromosome, complete genomeputative helicase5e-1170.1
NC_010067:660659:6802536802536820131761Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein8e-1169.3
NC_008054:1502210:1521724152172415248583135Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842, completePutative helicase9e-1168.9
NC_014391:1812500:1826145182614518308514707Micromonospora aurantiaca ATCC 27029 chromosome, complete genomehelicase domain-containing protein9e-1168.9
NC_018678:87064:98404984041016973294Alteromonas macleodii str. 'English Channel 673' chromosome,type III restriction protein res subunit2e-1068.2
NC_015953:2603526:2611843261184326149833141Streptomyces sp. SirexAA-E chromosome, complete genometype III restriction protein res subunit2e-1067.8
NC_009952:997950:1017620101762010204362817Dinoroseobacter shibae DFL 12, complete genometype III restriction protein res subunit3e-1067.4
NC_016112:1330500:1332673133267313355762904Methylomicrobium alcaliphilum chromosome, complete genomeDNA/RNA helicase3e-1067.4
NC_008529:1514000:1540192154019215433323141Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365, completeDNA or RNA helicase of superfamily II4e-1067
NC_011886:1176238:1194985119498511981403156Arthrobacter chlorophenolicus A6, complete genometype III restriction protein res subunit4e-1067
NC_019897:2908971:2928416292841629316283213Thermobacillus composti KWC4 chromosome, complete genomeDNA/RNA helicase4e-1066.6
NC_016111:3577572:3586386358638635895293144Streptomyces cattleya NRRL 8057, complete genomeATP-dependent helicase6e-1066.2
NC_014215:421683:4300964300964332603165Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1,Putative carboxylic ester hydrolase5e-1066.2
NC_021177:2766910:2773012277301227761493138Streptomyces fulvissimus DSM 40593, complete genomeATP-dependent helicase8e-1065.9
NC_014915:2092678:2137988213798821404352448Geobacillus sp. Y412MC52 chromosome, complete genometype III restriction protein res subunit1e-0965.5
NC_013411:2975364:2998057299805730005042448Geobacillus sp. Y412MC61, complete genometype III restriction protein res subunit1e-0965.5
NC_008541:1042322:1051193105119310543843192Arthrobacter sp. FB24 chromosome 1, complete sequencetype III restriction enzyme, res subunit1e-0965.5
NC_015576:612164:6435846435846475823999Mycobacterium sp. JDM601 chromosome, complete genometype III restriction enzyme res subunit2e-0964.7
NC_012914:336750:3498003498003529613162Paenibacillus sp. JDR-2, complete genometype III restriction protein res subunit2e-0964.7
NC_007954:334795:3347953347953379503156Shewanella denitrificans OS217, complete genometype III restriction enzyme, res subunit2e-0964.7
NC_014206:1467000:1468175146817514706312457Geobacillus sp. C56-T3 chromosome, complete genometype III restriction protein res subunit2e-0964.3
NC_016943:3352413:3364769336476933694784710Blastococcus saxobsidens DD2, complete genomehypothetical protein2e-0964.3
NC_011891:4450031:4468556446855644716573102Anaeromyxobacter dehalogenans 2CP-1, complete genometype III restriction protein res subunit4e-0963.5
NC_009328:2083386:2126131212613121285782448Geobacillus thermodenitrificans NG80-2 chromosome, complete genomeDNA/RNA helicase5e-0963.2
NC_012108:4454705:4468235446823544714653231Desulfobacterium autotrophicum HRM2, complete genomeHsdR36e-0963.2
NC_005363:3562205:3562205356220535639471743Bdellovibrio bacteriovorus HD100, complete genomeputative ATP-dependent helicase8e-0962.4
NC_009943:1499111:1500676150067615030392364Candidatus Desulfococcus oleovorans Hxd3, complete genometype III restriction protein res subunit1e-0862
NC_015660:3328595:3328595332859533314592865Geobacillus thermoglucosidasius C56-YS93 chromosome, completetype III restriction protein res subunit1e-0862
NC_015434:1173794:1180675118067511837493075Verrucosispora maris AB-18-032 chromosome, complete genometype iii restriction protein res subunit1e-0861.6
NC_012793:383612:4080904080904112513162Geobacillus sp. WCH70, complete genometype III restriction protein res subunit2e-0861.6
NC_014820:582443:5941415941415957541614Cenarchaeum symbiosum A, complete genomesuperfamily II helicase2e-0861.6
NC_009617:3263413:3271545327154532740822538Clostridium beijerinckii NCIMB 8052 chromosome, complete genometype III restriction protein, res subunit3e-0860.5
NC_012108:4454705:4456089445608944592113123Desulfobacterium autotrophicum HRM2, complete genomeRecQ11e-0758.5
NC_013889:2603914:2614374261437426175743201Thioalkalivibrio sp. K90mix chromosome, complete genometype III restriction protein res subunit1e-0758.5
NC_018691:1322389:1338303133830313399791677Alcanivorax dieselolei B5 chromosome, complete genomeDNA/RNA helicase2e-0758.2
NC_015564:2870631:2888119288811928897171599Amycolicicoccus subflavus DQS3-9A1 chromosome, complete genomeType III restriction enzyme, res subunit2e-0758.2
NC_013131:1593840:1605167160516716068371671Catenulispora acidiphila DSM 44928, complete genometype III restriction protein res subunit3e-0757.8
NC_015671:3211972:3250657325065732553004644Cellvibrio gilvus ATCC 13127 chromosome, complete genometype III restriction protein res subunit4e-0757
NC_009429:401500:4185044185044213742871Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA01, completetransposase, IS4 family protein1e-0655.5
NC_015576:612164:6653886653886684893102Mycobacterium sp. JDM601 chromosome, complete genometype III restriction enzyme res subunit1e-0655.5
NC_010556:316996:3224273224273247512325Exiguobacterium sibiricum 255-15, complete genometype III restriction protein res subunit1e-0655.5
NC_009675:4644173:4668098466809846721444047Anaeromyxobacter sp. Fw109-5 chromosome, complete genometype III restriction protein res subunit2e-0655.1
NC_009051:419929:4323924323924355803189Methanoculleus marisnigri JR1, complete genometype III restriction enzyme, res subunit2e-0654.7
NC_009050:212270:2299552299552327412787Rhodobacter sphaeroides ATCC 17029 chromosome 2, complete sequencetype III restriction enzyme, res subunit4e-0653.5
NC_010162:11387949:1140531711405317114077432427Sorangium cellulosum 'So ce 56', complete genomehelicase-related protein5e-0653.1