Pre_GI: BLASTP Hits

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Query: NC_012808:3711806:3723147 Methylobacterium extorquens AM1, complete genome

Start: 3723147, End: 3723470, Length: 324

Host Lineage: Methylobacterium extorquens; Methylobacterium; Methylobacteriaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: First isolated in 1960 in Oxford, England, as an airborne contaminant growing on methylamine. This strain can grow on methylamine or methanol, but not methane. This organism is capable of growth on one-carbon compounds such as methanol. Methanol is oxidized to formaldehyde which is then used metabolically to generate either energy or biomass. These bacteria are commonly found in the environment, especially associated with plants which produce methanol when metabolizing pectin during cell wall synthesis. At least 25 genes are required for this complex process of converting methanol to formaldehyde and this specialized metabolic pathway is of great interest.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010172:3712000:372149237214923721863372Methylobacterium extorquens PA1, complete genometranscription elongation factor GreA/GreB domain protein1e-54211
NC_012988:4075429:408741640874164087739324Methylobacterium extorquens DM4, complete genomeelongation factor, GreA/GreB family2e-54210
NC_009952:526456:544496544496544927432Dinoroseobacter shibae DFL 12, complete genomeGreA/GreB family elongation factor2e-21101
NC_014623:6950638:695431569543156954749435Stigmatella aurantiaca DW4/3-1 chromosome, complete genometranscription elongation factor1e-1478.6
NC_017168:1729922:175286417528641753274411Yersinia pestis A1122 chromosome, complete genomenucleoside diphosphate kinase regulator7e-1269.3
NC_014029:4057696:408064640806464081056411Yersinia pestis Z176003 chromosome, complete genomenucleoside diphosphate kinase regulator7e-1269.3
NC_009708:483253:506237506237506647411Yersinia pseudotuberculosis IP 31758 chromosome, complete genomenucleoside diphosphate kinase regulator7e-1269.3
NC_009381:321577:344520344520344930411Yersinia pestis Pestoides F chromosome, complete genomenucleoside diphosphate kinase regulator7e-1269.3
NC_003143:4105754:412869641286964129106411Yersinia pestis CO92, complete genomenucleoside diphosphate kinase regulator7e-1269.3
NC_016614:822715:840321840321840728408Vibrio sp. EJY3 chromosome 2, complete sequencenucleoside diphosphate kinase regulator3e-1167
NC_013166:82986:107723107723108133411Kangiella koreensis DSM 16069, complete genomeGreA/GreB family elongation factor2e-1064.7
NC_007519:1244198:126286712628671263280414Desulfovibrio alaskensis G20 chromosome, complete genomeGreA/GreB family elongation factor4e-0960.1
NC_011001:2085986:213958521395852139983399Burkholderia cenocepacia J2315 chromosome 2, complete sequenceputative transcription elongation factor3e-0857.4
NC_010515:2691000:269403526940352694433399Burkholderia cenocepacia MC0-3 chromosome 2, complete sequenceGreA/GreB family elongation factor3e-0857.4
NC_007511:1147696:115267911526791153077399Burkholderia sp. 383 chromosome 2, complete sequenceGreA/GreB family elongation factor3e-0857.4
NC_015410:2698572:270645827064582707378921Pseudomonas mendocina NK-01 chromosome, complete genomeacetyltransferase6e-0753.1
NC_004129:3965947:3973732397373239748711140Pseudomonas fluorescens Pf-5, complete genomeacetyltransferase, GNAT family family7e-0752.8
NC_014972:480355:486589486589487002414Desulfobulbus propionicus DSM 2032 chromosome, complete genomeGreA/GreB family elongation factor3e-0650.4