Pre_GI: BLASTP Hits

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Query: NC_012668:3037345:3063160 Vibrio cholerae MJ-1236 chromosome 1, complete sequence

Start: 3063160, End: 3065178, Length: 2019

Host Lineage: Vibrio cholerae; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: Vibrio cholerae MJ-1236 is a toxigenic O1 El Tor Inaba strain from Matlab, Bangladesh, 1994 that represents the "Matlab variant" of El Tor. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. Vibrio cholerae can colonize the mucosal surface of the small intestines of humans where it will cause cholera, a severe and sudden onset diarrheal disease. One famous outbreak was traced to a contaminated well in London in 1854 by John Snow, and epidemics, which can occur with extreme rapidity, are often associated with conditions of poor sanitation. The disease has a high lethality if left untreated, and millions have died over the centuries. There have been seven major pandemics between 1817 and today. Six were attributed to the classical biotype, while the 7th, which started in 1961, is associated with the El Tor biotype.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_007651:3064530:3145443314544331474251983Burkholderia thailandensis E264 chromosome I, complete sequenceputative DNA mismatch repair protein1e-132473
NC_014323:4665610:4674910467491046768891980Herbaspirillum seropedicae SmR1 chromosome, complete genomeDNA mismatch repair protein7e-132471
NC_014931:724102:7336267336267356171992Variovorax paradoxus EPS chromosome, complete genomeputative DNA mismatch repair protein3e-122439
NC_009832:110239:1176301176301196482019Serratia proteamaculans 568, complete genomehypothetical protein7e-54212
NC_015277:3351504:3367591336759133696242034Sphingobacterium sp. 21 chromosome, complete genomehypothetical protein2e-53211
NC_014371:1076642:1083238108323810853072070Prevotella melaninogenica ATCC 25845 chromosome chromosome II,hypothetical protein2e-46187
NC_013665:2176502:2194704219470421961881485Methanocella paludicola SANAE, complete genomehypothetical protein7e-31135
NC_012968:239476:2485822485822505761995Methylotenera mobilis JLW8, complete genomehypothetical protein3e-1790.9
NC_017047:2042346:2064719206471920667041986Rahnella aquatilis HX2 chromosome, complete genomehypothetical protein2e-1688.2
NC_014150:2560475:2583612258361225856302019Brachyspira murdochii DSM 12563 chromosome, complete genomehypothetical protein1e-1172.4
NC_014150:1936154:1958927195892719609452019Brachyspira murdochii DSM 12563 chromosome, complete genomehypothetical protein1e-1172.4