Pre_GI: BLASTP Hits

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Query: NC_012668:3037345:3046790 Vibrio cholerae MJ-1236 chromosome 1, complete sequence

Start: 3046790, End: 3047173, Length: 384

Host Lineage: Vibrio cholerae; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: Vibrio cholerae MJ-1236 is a toxigenic O1 El Tor Inaba strain from Matlab, Bangladesh, 1994 that represents the "Matlab variant" of El Tor. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. Vibrio cholerae can colonize the mucosal surface of the small intestines of humans where it will cause cholera, a severe and sudden onset diarrheal disease. One famous outbreak was traced to a contaminated well in London in 1854 by John Snow, and epidemics, which can occur with extreme rapidity, are often associated with conditions of poor sanitation. The disease has a high lethality if left untreated, and millions have died over the centuries. There have been seven major pandemics between 1817 and today. Six were attributed to the classical biotype, while the 7th, which started in 1961, is associated with the El Tor biotype.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011770:2804218:2816136281613628174461311Pseudomonas aeruginosa LESB58, complete genomeputative nrbE-like protein1e-56218
NC_015379:2751342:2769752276975227710591308Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,putative transporter, membrane protein9e-26115
NC_010943:9294:3122031220325541335Stenotrophomonas maltophilia K279a, complete genomeputative MFS family transporter protein6e-2096.3
NC_016616:1182125:1187063118706311884001338Dechlorosoma suillum PS chromosome, complete genomearabinose efflux permease family protein3e-1787
NC_020911:1776670:1778183177818317795051323Octadecabacter antarcticus 307, complete genomeputative MFS-type transporter1e-1685.5
NC_009380:3384737:3396406339640633977341329Salinispora tropica CNB-440 chromosome, complete genomemajor facilitator transporter2e-1373.9
NC_006361:2920028:2937977293797729392241248Nocardia farcinica IFM 10152, complete genomeputative transporter2e-1064.7