Pre_GI: BLASTP Hits

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Query: NC_012125:3879917:3893991 Salmonella enterica subsp. enterica serovar Paratyphi C strain

Start: 3893991, End: 3894518, Length: 528

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The genome of this strain harbors a large pathogenicity island, SPI7, with genes coding for the Vi (virulence) antigen and other genes potentially associated with virulence. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016863:3905875:392204739220473922526480Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative inner membrane protein7e-65246
NC_016860:3964000:398364439836443984123480Salmonella enterica subsp. enterica serovar Typhimurium strputative inner membrane protein7e-65246
NC_013716:4306695:435027043502704350791522Citrobacter rodentium ICC168, complete genomehypothetical protein3e-50197
NC_014618:2423661:243754624375462438043498Enterobacter cloacae SCF1 chromosome, complete genomehypothetical protein1e-49195
NC_016832:3858815:386180838618083862281474Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,hypothetical protein7e-49192
NC_015061:3147691:316561731656173166126510Rahnella sp. Y9602 chromosome, complete genomehypothetical protein3e-43174
NC_017047:3212000:323021932302193230728510Rahnella aquatilis HX2 chromosome, complete genomehypothetical protein3e-43174
NC_016818:3148000:316614131661413166632492Rahnella aquatilis CIP 78.65 = ATCC 33071 chromosome, completehypothetical protein6e-43173
NC_003198:3881221:388756938875693888044476Salmonella enterica subsp. enterica serovar Typhi str. CT18,9e-39159
NC_016830:2247789:228145922814592281971513Pseudomonas fluorescens F113 chromosome, complete genomeprotein CigR2e-1788.2
NC_008027:2331617:235064523506452351073429Pseudomonas entomophila L48, complete genomehypothetical protein3e-1581.3
NC_009656:2663387:268464426846442685183540Pseudomonas aeruginosa PA7 chromosome, complete genomehypothetical protein8e-1579.7