Pre_GI: BLASTP Hits

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Query: NC_012125:2826624:2846380 Salmonella enterica subsp. enterica serovar Paratyphi C strain

Start: 2846380, End: 2847219, Length: 840

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The genome of this strain harbors a large pathogenicity island, SPI7, with genes coding for the Vi (virulence) antigen and other genes potentially associated with virulence. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_006905:2857699:286436328643632865349987Salmonella enterica subsp. enterica serovar Choleraesuis strhypothetical protein1e-152538
NC_007912:909112:924353924353925216864Saccharophagus degradans 2-40, complete genomenucleotide-binding protein containing TIR -like domain-like5e-42171
NC_009254:637952:6886996886996898321134Burkholderia vietnamiensis G4 chromosome 3, complete sequencenucleotide-binding protein2e-40166
NC_013508:1491945:150599215059921506885894Edwardsiella tarda EIB202, complete genomepredicted nucleotide-binding protein containing TIR -like domain5e-40164
NC_004459:2443000:251914825191482520047900Vibrio vulnificus CMCP6 chromosome I, complete sequencePredicted nucleotide-binding protein3e-39162
NC_004547:3207776:323828032382803239092813Erwinia carotovora subsp. atroseptica SCRI1043, complete genomehypothetical protein1e-37156
NC_010511:5424004:543090954309095431814906Methylobacterium sp. 4-46 chromosome, complete genomenucleotide-binding protein7e-37154
NC_015593:797675:808323808323809219897Sphingobium chlorophenolicum L-1 chromosome chromosome 1, completeNucleotide-binding protein TIR-like protein2e-36152
NC_011899:12699:341023410234926825Halothermothrix orenii H 168, complete genome1e-35149
NC_012660:5793200:580498958049895805441453Pseudomonas fluorescens SBW25 chromosome, complete genome3e-35149
NC_013440:6045708:6056153605615360579431791Haliangium ochraceum DSM 14365, complete genomeNucleotide-binding protein, predicted, TIR-like protein1e-34146
NC_014666:13876:198111981120680870Frankia sp. EuI1c chromosome, complete genomenucleotide-binding protein1e-27123
NC_009485:3461051:347096034709603471835876Bradyrhizobium sp. BTAi1 chromosome, complete genomehypothetical protein9e-27120
NC_009051:1730104:174029817402981741206909Methanoculleus marisnigri JR1, complete genomenucleotide-binding protein containing TIR-like domain-like1e-25117
NC_007509:71954:923849238492767384Burkholderia sp. 383 chromosome 3, complete sequencenucleotide-binding protein containing TIR-like domain3e-23108
NC_003295:2787371:281548328154832816184702Ralstonia solanacearum GMI1000, complete genomehypothetical protein9e-21100
NC_014774:171500:200227200227201039813Candidatus Liberibacter solanacearum CLso-ZC1 chromosome, completehypothetical protein2e-1893.2
NC_014774:1210004:124109612410961241908813Candidatus Liberibacter solanacearum CLso-ZC1 chromosome, completehypothetical protein2e-1893.2
NC_013958:29548:421784217842963786Nitrosococcus halophilus Nc4 plasmid pNHAL01, complete sequencenucleotide-binding protein containing TIR -like protein domain-like protein1e-1067.4
NC_012791:2832001:285597728559772856747771Variovorax paradoxus S110 chromosome 1, complete genomehypothetical protein5e-0961.6
NC_009445:6621996:664819266481926648395204Bradyrhizobium sp. ORS 278 chromosome, complete genomehypothetical protein6e-0858.2
NC_013037:1587673:160142716014271602347921Dyadobacter fermentans DSM 18053, complete genomenucleotide-binding protein containing TIR -like domain-like protein8e-0754.7