Pre_GI: BLASTP Hits

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Query: NC_012125:1360593:1365046 Salmonella enterica subsp. enterica serovar Paratyphi C strain

Start: 1365046, End: 1365741, Length: 696

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The genome of this strain harbors a large pathogenicity island, SPI7, with genes coding for the Vi (virulence) antigen and other genes potentially associated with virulence. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017328:335160:337884337884338576693Shigella flexneri 2002017 chromosome, complete genomeputative DNA transfer protein5e-70263
NC_016902:1475521:147824514782451478937693Escherichia coli KO11FL chromosome, complete genomeputative DNA transfer protein5e-70263
NC_013364:2612822:262679726267972627489693Escherichia coli O111:H- str. 11128, complete genomeputative DNA transfer protein5e-70263
NC_013361:3254000:327332232733223274014693Escherichia coli O26:H11 str. 11368 chromosome, complete genomeDNA transfer protein5e-70263
CP002516:1475521:147824514782451478937693Escherichia coli KO11, complete genomeputative DNA transfer protein5e-70263
CP002185:2608000:262692026269202627612693Escherichia coli W, complete genomehypothetical protein5e-70263
NC_011083:403022:405603405603406295693Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,putative DNA transfer protein gp75e-67253
NC_009800:320115:321526321526322218693Escherichia coli HS, complete genomeDNA transfer protein3e-61234
CU928145:2655989:267797826779782678670693Escherichia coli 55989 chromosome, complete genomeDNA transfer protein4e-60231
NC_011748:2655989:267797826779782678670693Escherichia coli 55989, complete genomeDNA transfer protein4e-60231
NC_011742:2489000:250611725061172506809693Escherichia coli S88 chromosome, complete genomeDNA transfer protein7e-58223
NC_008563:2565876:258302025830202583712693Escherichia coli APEC O1, complete genomeputative DNA transfer protein7e-58223
NC_007946:2593500:260979426097942610486693Escherichia coli UTI89, complete genomeDNA transfer protein2e-57222
NC_016860:397138:400179400179400868690Salmonella enterica subsp. enterica serovar Typhimurium strDNA transfer protein4e-53207
NC_011205:645591:648172648172648861690Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853DNA transfer protein1e-52206
NC_002695:3189425:319562231956223196302681Escherichia coli O157:H7 str. Sakai, complete genomeputative DNA transfer protein precursor3e-48191
NC_002655:3260500:326557832655783266258681Escherichia coli O157:H7 EDL933, complete genomeputative prophage DNA injection protein3e-48191
NC_013008:3231414:325460932546093255289681Escherichia coli O157:H7 str. TW14359 chromosome, complete genomeprophage DNA injection protein3e-48191
NC_013941:2928000:293668829366882937368681Escherichia coli O55:H7 str. CB9615 chromosome, complete genomephage DNA transfer protein3e-48191
NC_011353:3276734:329973832997383300364627Escherichia coli O157:H7 str. EC4115 chromosome, complete genomeDNA transfer protein3e-48191
NC_011740:2072173:208819320881932088846654Escherichia fergusonii ATCC 35469, complete genomeDNA transfer protein gp7 from phage origin1e-47189
NC_010067:2529750:256799625679962568685690Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein2e-43175
NC_006905:401154:403672403672404361690Salmonella enterica subsp. enterica serovar Choleraesuis strDNA transfer protein gp7 precursor3e-42171
NC_020418:3102460:311739231173923118072681Morganella morganii subsp. morganii KT, complete genomehypothetical protein6e-41167
NC_007712:1516589:154211715421171542752636Sodalis glossinidius str. 'morsitans', complete genomeputative phage DNA injection protein1e-33143