Pre_GI: BLASTP Hits

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Query: NC_012125:1360593:1360593 Salmonella enterica subsp. enterica serovar Paratyphi C strain

Start: 1360593, End: 1361846, Length: 1254

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The genome of this strain harbors a large pathogenicity island, SPI7, with genes coding for the Vi (virulence) antigen and other genes potentially associated with virulence. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013364:2612822:2632609263260926338621254Escherichia coli O111:H- str. 11128, complete genomeputative capsid protein0861
NC_007946:2593500:2613745261374526149981254Escherichia coli UTI89, complete genomehypothetical protein0859
NC_011742:2489000:2510068251006825113211254Escherichia coli S88 chromosome, complete genomeCoat protein from phage0858
NC_008563:2565876:2586971258697125882241254Escherichia coli APEC O1, complete genomehypothetical protein0858
NC_010067:2529750:2571958257195825732531296Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein3e-31136
NC_020418:3102460:3121460312146031227431284Morganella morganii subsp. morganii KT, complete genomehypothetical protein6e-29129
NC_011740:2072173:2092362209236220936571296Escherichia fergusonii ATCC 35469, complete genomeCoat protein (Protein gp5)5e-23109
NC_009256:1253384:1272272127227212734651194Burkholderia vietnamiensis G4 chromosome 1, complete sequencehypothetical protein4e-0653.1