Pre_GI: BLASTP Hits

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Query: NC_012125:1330066:1342574 Salmonella enterica subsp. enterica serovar Paratyphi C strain

Start: 1342574, End: 1342801, Length: 228

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The genome of this strain harbors a large pathogenicity island, SPI7, with genes coding for the Vi (virulence) antigen and other genes potentially associated with virulence. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016860:364981:374471374471374698228Salmonella enterica subsp. enterica serovar Typhimurium strbacteriophage ST64T protein 171e-36151
NC_011083:374000:383284383284383511228Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,superinfection exclusion protein6e-34142
NC_013361:3287671:329854432985443298855312Escherichia coli O26:H11 str. 11368 chromosome, complete genomesuperinfection exclusion protein1e-33141