Pre_GI: BLASTP Hits

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Query: NC_011989:594353:596548 Agrobacterium vitis S4 chromosome 1, complete sequence

Start: 596548, End: 596751, Length: 204

Host Lineage: Agrobacterium vitis; Agrobacterium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: Agrobacterium vitis is the causative agent of crown gall disease in grapes. Agrobacterium are Gram-negative, motile, soil-dwelling plant pathogens with the species name given based on the disease phenotype associated with the bacteria. Disease causing Agrobacterium spp. possess a tumor-inducing (Ti) plasmid, which carries genes for the formation of opines. A segment of the Ti plasmid gets transferred to the plant cell and integrates into the host cell genome. The plant cell then starts synthesizing opines, which can be catabolized by Agrobacterium spp, but not by the plant cells.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_007958:4371125:4373401437340143746001200Rhodopseudomonas palustris BisB5, complete genometransposase, IS204/IS1001/IS1096/IS11658e-1165.9
NC_012848:320883:3335873335873351431557Rhizobium leguminosarum bv. trifolii WSM1325 plasmid pR132501,transposase IS204/IS1001/IS1096/IS1165 family protein5e-0959.7
NC_010511:7400255:7408414740841474094481035Methylobacterium sp. 4-46 chromosome, complete genometransposase IS204/IS1001/IS1096/IS1165 family protein1e-0858.2
NC_011757:5102732:5109841510984151109261086Methylobacterium chloromethanicum CM4, complete genometransposase IS204/IS1001/IS1096/IS1165 family protein2e-0754.7
NC_015065:162317:1623171623171636511335Acidobacterium sp. MP5ACTX9 plasmid pACIX902, complete sequencetransposase IS204/IS1001/IS1096/IS1165 family protein2e-0754.3
NC_016587:523215:5301665301665315421377Azospirillum lipoferum 4B plasmid AZO_p4, complete sequencetransposase of ISAli11, ISL3 family1e-0652
NC_012988:4387735:4400950440095044025991650Methylobacterium extorquens DM4, complete genometransposase of ISMex10, ISL3 family1e-0548.9