Pre_GI: BLASTP Hits

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Query: NC_011959:131800:142309 Thermomicrobium roseum DSM 5159, complete genome

Start: 142309, End: 143841, Length: 1533

Host Lineage: Thermomicrobium roseum; Thermomicrobium; Thermomicrobiaceae; Thermomicrobiales; Chloroflexi; Bacteria

General Information: Thermomicrobium roseum DSM 5159 was isolated from Yellowstone National Park, USA. Obligate thermophile with unusual cell wall structure. Thermomicrobium roseum is a red-pigmented, rod-shaped, Gram-negative extreme thermophile that possesses both an atypical cell wall composition and an unusual cell membrane that is composed entirely of long-chain 1,2-diols. Analyses of environmental sequences from hot spring environments show that T.roseum displays a low quantity but ubiquitous presence in top layers of microbial mats. Few standard housekeeping genes are found on the megaplasmid, however, it does encode a complete system for chemotaxis including both chemosensory components and an entire flagellar apparatus. T. roseum oxidizes CO aerobically, making it the first thermophile known to do so. In addition, is is propose that glycosylation of its carotenoids plays a crucial role in the adaptation of the cell membrane to this bacterium's thermophilic lifestyle. Because T. roseum is a deep-branching member of this phylum, eventhough this species is not photosynthetic, analysis of the genome provides some insight into the origins of photosynthesis in the Chloroflexi.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_021171:608315:6135026135026149261425Bacillus sp. 1NLA3E, complete genomefamily 1 extracellular solute-binding protein4e-32139
NC_014844:1270618:1300632130063213022001569Desulfovibrio aespoeensis Aspo-2 chromosome, complete genomefamily 1 extracellular solute-binding protein9e-27122
NC_018643:1309804:1326753132675313282911539Alpha proteobacterium HIMB5 chromosome, complete genomecarbohydrate ABC transporter substrate-binding protein, CUT1 family6e-26119
NC_009485:8187321:8204763820476382062231461Bradyrhizobium sp. BTAi1 chromosome, complete genomesugar ABC transporter periplasmic protein2e-24114
NC_018644:478077:4903404903404918661527Alpha proteobacterium HIMB59 chromosome, complete genomecarbohydrate ABC transporter substrate-binding protein, CUT1 family2e-21104
NC_014830:335380:3640853640853656921608Intrasporangium calvum DSM 43043 chromosome, complete genomecarbohydrate ABC transporter substrate-binding protein, CUT1 family2e-20100
NC_013642:942767:9427679427679440771311Thermotoga naphthophila RKU-10, complete genomeextracellular solute-binding protein family 11e-1791.7
NC_009828:1474970:1491131149113114924261296Thermotoga lettingae TMO, complete genomeextracellular solute-binding protein family 12e-1377.4
NC_018644:637497:6461086461086474181311Alpha proteobacterium HIMB59 chromosome, complete genomecarbohydrate ABC transporter substrate-binding protein, CUT1 family4e-1273.2
NC_009921:8549757:8603053860305386043721320Frankia sp. EAN1pec, complete genomeextracellular solute-binding protein family 12e-1067.4
NC_010506:1893000:1911293191129319127291437Shewanella woodyi ATCC 51908, complete genomeextracellular solute-binding protein family 15e-1066.2
NC_008786:2573558:2583576258357625849221347Verminephrobacter eiseniae EF01-2, complete genomeextracellular solute-binding protein, family 11e-0965.1
NC_011978:1500663:1502322150232215035871266Thermotoga neapolitana DSM 4359, complete genomeExtracellular solute-binding protein, family 1 precursor4e-0860.1
NC_013642:942767:9781219781219795451425Thermotoga naphthophila RKU-10, complete genomeextracellular solute-binding protein family 14e-0757
NC_008010:200796:2067502067502080361287Deinococcus geothermalis DSM 11300 plasmid 1, complete sequenceextracellular solute-binding protein, family 11e-0655.5
NC_014532:1713987:1728058172805817293681311Halomonas elongata DSM 2581, complete genomeABC-type transport system periplasmic substrate-binding protein2e-0654.7
NC_012669:4118230:4129844412984441311091266Beutenbergia cavernae DSM 12333, complete genomeextracellular solute-binding protein family 12e-0654.3
NC_009952:526456:5340715340715354141344Dinoroseobacter shibae DFL 12, complete genomeABC-type sugar / sn-glycerol 3-phosphate transport protein4e-0653.5