Pre_GI: BLASTP Hits

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Query: NC_011147:4297513:4306966 Salmonella enterica subsp. enterica serovar Paratyphi A str

Start: 4306966, End: 4307280, Length: 315

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is a clinical isolate collected from a child with paratyphoid fever in Karachi, Pakistan, 2004. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_003198:4397074:440447844044784404861384Salmonella enterica subsp. enterica serovar Typhi str. CT18,hypothetical protein1e-53207
NC_004631:4381724:438912843891284389511384Salmonella enterica subsp. enterica serovar Typhi Ty2, completehypothetical protein1e-53207
NC_016832:4368948:437635243763524376615264Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,hypothetical protein4e-44176
NC_015761:4188250:4188250418825041978439594Salmonella bongori NCTC 12419, complete genomelarge repetitive protein3e-35147
NC_003197:4551880:456008345600834560352270Salmonella typhimurium LT2, complete genomehypothetical protein3e-1993.6
NC_016810:4573172:458066345806634580932270Salmonella enterica subsp. enterica serovar Typhimurium strbacteriophage protein3e-1993.6
NC_016856:4563435:457291345729134573182270Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Shypothetical protein3e-1993.6
NC_016857:4573173:458066445806644580933270Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74hypothetical protein3e-1993.6
NC_016863:4513106:452051945205194520788270Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1hypothetical protein3e-1993.6
NC_013508:343617:3455573455573536448088Edwardsiella tarda EIB202, complete genomehypothetical protein2e-1580.9
NC_010102:4477836:448554744855474485684138Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein2e-1580.9
NC_006905:4486433:449414444941444494533390Salmonella enterica subsp. enterica serovar Choleraesuis strputative cytoplasmic protein6e-1579.3
NC_016831:4367000:437489643748964375231336Salmonella enterica subsp. enterica serovar Gallinarum/pullorumhypothetical protein7e-1579.3
NC_012125:4481808:448951944895194489854336Salmonella enterica subsp. enterica serovar Paratyphi C straincytoplasmic protein8e-1579
NC_017046:4571833:457932445793244579512189Salmonella enterica subsp. enterica serovar Typhimurium str. 798bacteriophage protein2e-1064.7
NC_016860:4649274:465747746574774657665189Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein2e-1064.7