Pre_GI: BLASTP Hits

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Query: NC_011147:2536000:2545478 Salmonella enterica subsp. enterica serovar Paratyphi A str

Start: 2545478, End: 2548165, Length: 2688

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is a clinical isolate collected from a child with paratyphoid fever in Karachi, Pakistan, 2004. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_006511:2540500:2549942254994225526292688Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCoutermembrane fimbrial usher protein01731
NC_003198:331314:3532093532093558962688Salmonella enterica subsp. enterica serovar Typhi str. CT18,outer membrane fimbrial user protein01721
NC_016832:2612809:2622118262211826248052688Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,hypothetical protein01719
NC_004631:2615908:2625217262521726279042688Salmonella enterica subsp. enterica serovar Typhi Ty2, completeouter membrane fimbrial user protein01719
NC_011083:338910:3518153518153545022688Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,TcfC protein01716
NC_011094:334267:3540933540933567802688Salmonella enterica subsp. enterica serovar Schwarzengrund strTcfC protein01712
NC_016818:3816000:3834095383409538367882694Rahnella aquatilis CIP 78.65 = ATCC 33071 chromosome, completehypothetical protein2e-118427
NC_020181:1317647:1320274132027413229912718Enterobacter aerogenes EA1509E, complete genomeAlpha-fimbriae usher protein3e-117423
NC_017047:3869350:3889905388990538925982694Rahnella aquatilis HX2 chromosome, complete genomeouter membrane fimbrial usher protein2e-113410
NC_015061:3801927:3822514382251438252072694Rahnella sp. Y9602 chromosome, complete genomeouter membrane fimbrial usher protein2e-113410
NC_016835:405482:4153434153434180302688Rahnella aquatilis CIP 78.65 = ATCC 33071 plasmid pRahaq201,hypothetical protein4e-104379
NC_009788:16360:3184431844344622619Escherichia coli E24377A plasmid pETEC_73, complete sequencefimbrial usher family protein1e-87325
NC_008570:1094442:1100017110001711024522436Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genomehypothetical protein5e-0757.4
NC_010515:1678487:1692696169269616952062511Burkholderia cenocepacia MC0-3 chromosome 2, complete sequencehypothetical protein7e-0653.5