Pre_GI: BLASTP Hits

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Query: NC_011094:593100:608225 Salmonella enterica subsp. enterica serovar Schwarzengrund str

Start: 608225, End: 608695, Length: 471

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This serovar is the predominant cause of Salmonellosis in Southeast Asia, a major source of imported food products to the USA. It was also the cause of the first recognized outbreak of fluoroquinolone-resistant salmonellosis in the USA. Recent reports suggest that high-level fluoroquinolone resistance is emerging in S. Schwarzengrund in different parts of the world. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013941:3300000:330439633043963304866471Escherichia coli O55:H7 str. CB9615 chromosome, complete genomeGp452e-89327
NC_002655:1332961:133936413393641339834471Escherichia coli O157:H7 EDL933, complete genomeunknown protein encoded by bacteriophage BP-933W2e-89327
NC_011353:3276734:328561332856133286083471Escherichia coli O157:H7 str. EC4115 chromosome, complete genomehypothetical protein2e-89327
NC_011601:1039500:104960810496081050078471Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomehypothetical protein2e-89327
NC_013008:3231414:324048432404843240954471Escherichia coli O157:H7 str. TW14359 chromosome, complete genomehypothetical protein2e-89327
NC_013361:1558423:156755815675581568028471Escherichia coli O26:H11 str. 11368 chromosome, complete genomehypothetical protein2e-89327
NC_013361:3112023:313159031315903132060471Escherichia coli O26:H11 str. 11368 chromosome, complete genomehypothetical protein2e-89327
NC_013361:3287671:329793032979303298400471Escherichia coli O26:H11 str. 11368 chromosome, complete genomehypothetical protein6e-89325
NC_011601:2614691:262207826220782622548471Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomehypothetical protein2e-88324
NC_013364:2645438:265399326539932654463471Escherichia coli O111:H- str. 11128, complete genomehypothetical protein2e-88323
NC_013364:1183000:119062111906211191091471Escherichia coli O111:H- str. 11128, complete genomehypothetical protein2e-88323
NC_013353:5361207:537335553733555373825471Escherichia coli O103:H2 str. 12009, complete genomehypothetical protein2e-88323
AP010958:5361207:537335553733555373825471Escherichia coli O103:H2 str. 12009 DNA, complete genomehypothetical protein2e-88323