Pre_GI: BLASTP Hits

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Query: NC_011094:2791719:2814885 Salmonella enterica subsp. enterica serovar Schwarzengrund str

Start: 2814885, End: 2816159, Length: 1275

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This serovar is the predominant cause of Salmonellosis in Southeast Asia, a major source of imported food products to the USA. It was also the cause of the first recognized outbreak of fluoroquinolone-resistant salmonellosis in the USA. Recent reports suggest that high-level fluoroquinolone resistance is emerging in S. Schwarzengrund in different parts of the world. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016514:891772:9032249032249043961173Enterobacter cloacae EcWSU1 chromosome, complete genomehypothetical protein2e-147522
NC_009801:3013838:3030090303009030312441155Escherichia coli E24377A, complete genome6e-58225
NC_004547:1174650:1182640118264011839111272Erwinia carotovora subsp. atroseptica SCRI1043, complete genomeputative phage-related reverse transcriptase/maturase family protein1e-56221
NC_010694:2492378:2502866250286625041371272Erwinia tasmaniensis, complete genomePutative phage-related reverse transcriptase/maturase family protein1e-55217
NC_009667:1371924:1380181138018113814551275Ochrobactrum anthropi ATCC 49188 chromosome 1, complete sequencehypothetical protein1e-31137
NC_008800:1300500:1310337131033713115571221Yersinia enterocolitica subsp. enterocolitica 8081 chromosome,putative maturase protein2e-31137
NC_020911:1859210:1869981186998118712701290Octadecabacter antarcticus 307, complete genomeputative reverse transcriptase1e-29130
NC_008209:2367500:2375796237579623770761281Roseobacter denitrificans OCh 114, complete genomeputative reverse transcriptase/maturase family protein5e-29129
NC_015968:74124:8484884848860801233Enterobacter asburiae LF7a chromosome, complete genomeRNA-directed DNA polymerase9e-28124
NC_016602:2854107:2865456286545628668081353Vibrio furnissii NCTC 11218 chromosome 1, complete sequencephage-related reverse transcriptase/maturase family protein3e-24113
NC_014500:564864:5905635905635919061344Dickeya dadantii 3937 chromosome, complete genomeRetron-type reverse transcriptase4e-24112
NC_017098:1149145:1172600117260011739551356Spirochaeta africana DSM 8902 chromosome, complete genomereverse transcriptase1e-21104
NC_006350:595893:6461556461556474891335Burkholderia pseudomallei K96243 chromosome 1, complete sequencehypothetical protein2e-1893.6
NC_012968:2000218:2009033200903320104991467Methylotenera mobilis JLW8, complete genomeRNA-directed DNA polymerase (Reverse transcriptase)6e-0858.9
NC_014171:261952:2642142642142653681155Bacillus thuringiensis BMB171 chromosome, complete genomehypothetical protein4e-0756.6
NC_014926:1381152:1390925139092513934232499Thermovibrio ammonificans HB-1 chromosome, complete genomehypothetical protein8e-0755.5