Pre_GI: BLASTP Hits

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Query: NC_011080:4461851:4468194 Salmonella enterica subsp. enterica serovar Newport str. SL254,

Start: 4468194, End: 4468328, Length: 135

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The SL254 strain is an MDR strain from one of two distinct lineages of the Newport serovar. Salmonella enterica subsp. enterica serovar Newport is common worldwide. Outbreak investigations and targeted studies have identified dairy cattle as the main reservoir this serotype. Antimicrobial resistance (Newport MDR-AmpC) is particularly problematic in this serotype, and the prevalence of Newport MDR-AmpC isolates from humans in the United States has increased from 0% during 1996-1997 to 26% in 2001. MDR strains have been recorded as resistant to ampicillin, chloramphenicol, streptomycin, sulphonamides and tetracycline (ACSSuT) and many of these strains show intermediate or full resistance to third-generation cephalosporins, kanamycin, potentiated sulphonamides, and gentamicin. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016856:4482845:449056844905684490723156Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Shypothetical protein3e-1890.5
NC_016832:4288980:429533542953354295469135Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,hypothetical protein4e-1890.1
NC_012125:4400636:440697944069794407113135Salmonella enterica subsp. enterica serovar Paratyphi C strainhypothetical protein4e-1890.1
NC_011149:4390315:439665843966584396792135Salmonella enterica subsp. enterica serovar Agona str. SL483,hypothetical protein4e-1890.1
NC_010102:4396500:440298244029824403137156Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein2e-1787.4
NC_016831:4286000:429250542925054292660156Salmonella enterica subsp. enterica serovar Gallinarum/pullorumhypothetical protein5e-1786.3