Pre_GI: BLASTP Hits

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Query: NC_011080:4177443:4190960 Salmonella enterica subsp. enterica serovar Newport str. SL254,

Start: 4190960, End: 4191847, Length: 888

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The SL254 strain is an MDR strain from one of two distinct lineages of the Newport serovar. Salmonella enterica subsp. enterica serovar Newport is common worldwide. Outbreak investigations and targeted studies have identified dairy cattle as the main reservoir this serotype. Antimicrobial resistance (Newport MDR-AmpC) is particularly problematic in this serotype, and the prevalence of Newport MDR-AmpC isolates from humans in the United States has increased from 0% during 1996-1997 to 26% in 2001. MDR strains have been recorded as resistant to ampicillin, chloramphenicol, streptomycin, sulphonamides and tetracycline (ACSSuT) and many of these strains show intermediate or full resistance to third-generation cephalosporins, kanamycin, potentiated sulphonamides, and gentamicin. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015125:3284095:330649133064913307462972Microbacterium testaceum StLB037, complete genomegalactose mutarotase2e-43176
NC_016800:979494:980341980341981258918Corynebacterium diphtheriae BH8 chromosome, complete genomeputative aldose 1-epimerase4e-28125
NC_014151:1373937:137393713739371374845909Cellulomonas flavigena DSM 20109 chromosome, complete genomeAldose 1-epimerase6e-28124
NC_016781:844613:854255854255855142888Corynebacterium pseudotuberculosis 3/99-5 chromosome, completealdose 1-epimerase8e-24110
NC_014329:844622:854264854264855151888Corynebacterium pseudotuberculosis FRC41 chromosome, completehypothetical protein8e-24110
NC_016932:832748:842391842391843278888Corynebacterium pseudotuberculosis 316 chromosome, complete genomealdose 1-epimerase2e-23109
NC_015151:443529:455731455731456537807Vulcanisaeta moutnovskia 768-28 chromosome, complete genomealdose 1-epimerase4e-21102
NC_013730:3695674:3700156370015637011931038Spirosoma linguale DSM 74, complete genomeAldose 1-epimerase9e-1477.8
NC_014212:670996:684465684465685385921Meiothermus silvanus DSM 9946 chromosome, complete genomeAldose 1-epimerase8e-1271.2
NC_016613:2103792:2106748210674821078121065Vibrio sp. EJY3 chromosome 1, complete sequencealdose 1-epimerase2e-0859.7
NC_012914:5938566:5956271595627159572751005Paenibacillus sp. JDR-2, complete genomeAldose 1-epimerase1e-0653.9
NC_006351:2759708:280270428027042803600897Burkholderia pseudomallei K96243 chromosome 2, complete sequencealdose 1-epimerase2e-0653.1
UCMB5137:1522159:152215915221591523127969Bacillus atrophaeus UCMB-5137putative epimerase4e-0652.4