Pre_GI: BLASTP Hits

Some Help

Query: NC_011080:2897977:2907647 Salmonella enterica subsp. enterica serovar Newport str. SL254,

Start: 2907647, End: 2907760, Length: 114

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The SL254 strain is an MDR strain from one of two distinct lineages of the Newport serovar. Salmonella enterica subsp. enterica serovar Newport is common worldwide. Outbreak investigations and targeted studies have identified dairy cattle as the main reservoir this serotype. Antimicrobial resistance (Newport MDR-AmpC) is particularly problematic in this serotype, and the prevalence of Newport MDR-AmpC isolates from humans in the United States has increased from 0% during 1996-1997 to 26% in 2001. MDR strains have been recorded as resistant to ampicillin, chloramphenicol, streptomycin, sulphonamides and tetracycline (ACSSuT) and many of these strains show intermediate or full resistance to third-generation cephalosporins, kanamycin, potentiated sulphonamides, and gentamicin. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016863:2844883:289949528994952899608114Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1hypothetical protein3e-1373.9
NC_011083:2847318:290551829055182905631114Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,putative inner membrane protein3e-1373.9
NC_011149:2829811:283946828394682839581114Salmonella enterica subsp. enterica serovar Agona str. SL483,putative inner membrane protein3e-1373.9
NC_011094:2791719:283813428381342838247114Salmonella enterica subsp. enterica serovar Schwarzengrund strhypothetical protein3e-1373.9
NC_011205:2962270:297570129757012975814114Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853inner membrane protein3e-1373.9
NC_012125:2826624:286622228662222866335114Salmonella enterica subsp. enterica serovar Paratyphi C strainhypothetical protein3e-1373.9
NC_016831:2779864:279329727932972793410114Salmonella enterica subsp. enterica serovar Gallinarum/pullorumhypothetical protein3e-1373.9
NC_016832:2743801:275722627572262757339114Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,hypothetical protein3e-1373.9
NC_016856:2896630:295124229512422951355114Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Shypothetical protein3e-1373.9
NC_016860:2917910:295457329545732954686114Salmonella enterica subsp. enterica serovar Typhimurium strputative inner membrane protein3e-1373.9
NC_010102:2881714:289514928951492895262114Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein3e-1373.9