Pre_GI: BLASTP Hits

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Query: NC_011080:2870428:2885577 Salmonella enterica subsp. enterica serovar Newport str. SL254,

Start: 2885577, End: 2885756, Length: 180

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The SL254 strain is an MDR strain from one of two distinct lineages of the Newport serovar. Salmonella enterica subsp. enterica serovar Newport is common worldwide. Outbreak investigations and targeted studies have identified dairy cattle as the main reservoir this serotype. Antimicrobial resistance (Newport MDR-AmpC) is particularly problematic in this serotype, and the prevalence of Newport MDR-AmpC isolates from humans in the United States has increased from 0% during 1996-1997 to 26% in 2001. MDR strains have been recorded as resistant to ampicillin, chloramphenicol, streptomycin, sulphonamides and tetracycline (ACSSuT) and many of these strains show intermediate or full resistance to third-generation cephalosporins, kanamycin, potentiated sulphonamides, and gentamicin. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010102:2862178:286508928650892865316228Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein1e-26118
NC_011147:4460726:446281244628124463039228Salmonella enterica subsp. enterica serovar Paratyphi A strhypothetical protein1e-25115
NC_006511:4465495:446758244675824467809228Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCChypothetical protein1e-25115
NC_016857:2871689:289735028973502897577228Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74hypothetical protein2e-24111
NC_016810:2871689:289735028973502897577228Salmonella enterica subsp. enterica serovar Typhimurium strbacteriophage protein2e-24111
NC_003198:4676536:469165346916534691880228Salmonella enterica subsp. enterica serovar Typhi str. CT18,hypothetical protein2e-24111
NC_004631:4661000:467454246745424674769228Salmonella enterica subsp. enterica serovar Typhi Ty2, completehypothetical protein2e-24111
NC_021066:5342127:535834153583415358568228Raoultella ornithinolytica B6, complete genomehypothetical protein2e-23107
NC_016845:575123:590588590588590815228Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,hypothetical protein2e-21100
NC_014121:677799:692164692164692391228Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completehypothetical protein2e-2098.2
NC_013508:3593000:360669736066973606930234Edwardsiella tarda EIB202, complete genomehypothetical protein2e-1994.4
NC_009436:3367194:338160533816053381832228Enterobacter sp. 638, complete genomehypothetical protein2e-1890.9
NC_014306:4376012:441009844100984410322225Erwinia billingiae Eb661, complete genomeConserved uncharacterized protein9e-1165.5
NC_014306:4901390:493932449393244939548225Erwinia billingiae Eb661, complete genomehypothetical protein2e-1064.7
NC_013956:3273340:327311932731193273343225Pantoea ananatis LMG 20103 chromosome, complete genomehypothetical protein2e-0754.7
NC_013941:338121:359974359974360195222Escherichia coli O55:H7 str. CB9615 chromosome, complete genomehypothetical protein4e-0650.4
NC_011353:305820:322880322880323101222Escherichia coli O157:H7 str. EC4115 chromosome, complete genomehypothetical protein4e-0650.4
NC_002695:301939:319000319000319221222Escherichia coli O157:H7 str. Sakai, complete genomehypothetical protein4e-0650.4