Pre_GI: BLASTP Hits

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Query: NC_011080:2870428:2876683 Salmonella enterica subsp. enterica serovar Newport str. SL254,

Start: 2876683, End: 2876970, Length: 288

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The SL254 strain is an MDR strain from one of two distinct lineages of the Newport serovar. Salmonella enterica subsp. enterica serovar Newport is common worldwide. Outbreak investigations and targeted studies have identified dairy cattle as the main reservoir this serotype. Antimicrobial resistance (Newport MDR-AmpC) is particularly problematic in this serotype, and the prevalence of Newport MDR-AmpC isolates from humans in the United States has increased from 0% during 1996-1997 to 26% in 2001. MDR strains have been recorded as resistant to ampicillin, chloramphenicol, streptomycin, sulphonamides and tetracycline (ACSSuT) and many of these strains show intermediate or full resistance to third-generation cephalosporins, kanamycin, potentiated sulphonamides, and gentamicin. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_007613:761234:763483763483764052570Shigella boydii Sb227, complete genomerepressor protein7e-1165.9
NC_014500:894136:9188619188619200541194Dickeya dadantii 3937 chromosome, complete genomeRepressor protein CI8e-1165.9
NC_013592:804288:821538821538822101564Dickeya dadantii Ech586, complete genomeCI repressor1e-1065.5
NC_013956:3525711:354353435435343543806273Pantoea ananatis LMG 20103 chromosome, complete genomeCI3e-1063.9
NC_012947:2898179:290790729079072908476570Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completeCI repressor4e-1063.5
NC_014306:1244721:124907312490731249669597Erwinia billingiae Eb661, complete genomeBacteriophage CI repressor1e-0961.6
NC_014837:3766426:378197237819723782577606Pantoea sp. At-9b chromosome, complete genomeCI repressor9e-0958.9
NC_013282:3389619:340505834050583405672615Cronobacter turicensis, complete genomePutative uncharacterized protein ORFI in retron EC673e-0857.4
NC_010694:614985:629291629291629869579Erwinia tasmaniensis, complete genomeBacteriophage 186 repressor protein CI5e-0856.6
NC_009436:3807420:381287738128773813464588Enterobacter sp. 638, complete genomebacteriophage CI repressor1e-0755.5
NC_009436:1466580:147758714775871478183597Enterobacter sp. 638, complete genomebacteriophage CI repressor1e-0755.1
NC_015061:2770856:277962827796282780188561Rahnella sp. Y9602 chromosome, complete genomeCI repressor1e-0755.1
NC_011601:846358:856102856102856671570Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomerepressor protein3e-0753.9
NC_012125:894955:920537920537920893357Salmonella enterica subsp. enterica serovar Paratyphi C strainrepressor protein4e-0753.5
NC_015061:596247:611561611561612151591Rahnella sp. Y9602 chromosome, complete genomeCI repressor5e-0753.1
NC_020181:5182568:519547351954735196063591Enterobacter aerogenes EA1509E, complete genomeCI1e-0652
NC_016845:4046142:405102140510214051617597Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,CI repressor1e-0652
NC_012912:1701231:174072917407291741118390Dickeya zeae Ech1591, complete genome1e-0651.6
NC_009648:3803622:383337538333753833950576Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genomeputative prophage repressor protein CI1e-0651.6
NC_016810:2871689:288692028869202887495576Salmonella enterica subsp. enterica serovar Typhimurium strbacteriophage repressor protein cI2e-0650.8
NC_016857:2871689:288686328868632887495633Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74phage repressor protein cI2e-0650.8
NC_011601:846358:855128855128856051924Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomehypothetical protein3e-0650.4