Pre_GI: BLASTP Hits

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Query: NC_011080:2789744:2796386 Salmonella enterica subsp. enterica serovar Newport str. SL254,

Start: 2796386, End: 2796709, Length: 324

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The SL254 strain is an MDR strain from one of two distinct lineages of the Newport serovar. Salmonella enterica subsp. enterica serovar Newport is common worldwide. Outbreak investigations and targeted studies have identified dairy cattle as the main reservoir this serotype. Antimicrobial resistance (Newport MDR-AmpC) is particularly problematic in this serotype, and the prevalence of Newport MDR-AmpC isolates from humans in the United States has increased from 0% during 1996-1997 to 26% in 2001. MDR strains have been recorded as resistant to ampicillin, chloramphenicol, streptomycin, sulphonamides and tetracycline (ACSSuT) and many of these strains show intermediate or full resistance to third-generation cephalosporins, kanamycin, potentiated sulphonamides, and gentamicin. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_003198:2703013:270965527096552709978324Salmonella enterica subsp. enterica serovar Typhi str. CT18,hypothetical protein8e-57218
NC_004631:283289:294871294871295194324Salmonella enterica subsp. enterica serovar Typhi Ty2, completehypothetical protein8e-57218
NC_010102:283364:297259297259297576318Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein3e-56216
NC_006905:2805877:281127828112782811601324Salmonella enterica subsp. enterica serovar Choleraesuis strputative outer membrane lipoprotein3e-56216
NC_011149:2701916:270730927073092707638330Salmonella enterica subsp. enterica serovar Agona str. SL483,hypothetical protein1e-55214
NC_013850:1198134:121277512127751213098324Klebsiella variicola At-22 chromosome, complete genomeputative lipoprotein6e-46182
NC_009648:3192483:319738531973853197708324Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genomehypothetical protein2e-45181
CP002516:1196000:121048412104841210807324Escherichia coli KO11, complete genomehypothetical protein2e-44177
CU928160:2785792:279123627912362791508273Escherichia coli IAI1 chromosome, complete genomeconserved hypothetical protein8e-38155
CP002185:2889656:289510028951002895372273Escherichia coli W, complete genomepredicted protein8e-38155
NC_009832:4136878:414185341418534142185333Serratia proteamaculans 568, complete genomehypothetical protein4e-28123
NC_015566:4205854:421082942108294211161333Serratia sp. AS12 chromosome, complete genomehypothetical protein2e-25114