Pre_GI: BLASTP Hits

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Query: NC_011080:2761403:2764359 Salmonella enterica subsp. enterica serovar Newport str. SL254,

Start: 2764359, End: 2764565, Length: 207

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The SL254 strain is an MDR strain from one of two distinct lineages of the Newport serovar. Salmonella enterica subsp. enterica serovar Newport is common worldwide. Outbreak investigations and targeted studies have identified dairy cattle as the main reservoir this serotype. Antimicrobial resistance (Newport MDR-AmpC) is particularly problematic in this serotype, and the prevalence of Newport MDR-AmpC isolates from humans in the United States has increased from 0% during 1996-1997 to 26% in 2001. MDR strains have been recorded as resistant to ampicillin, chloramphenicol, streptomycin, sulphonamides and tetracycline (ACSSuT) and many of these strains show intermediate or full resistance to third-generation cephalosporins, kanamycin, potentiated sulphonamides, and gentamicin. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016856:2812905:281586128158612816061201Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Shypothetical protein8e-34142
NC_015761:1017301:101939010193901019674285Salmonella bongori NCTC 12419, complete genomephage-like protein3e-33140
NC_009792:1770106:177754017775401777746207Citrobacter koseri ATCC BAA-895, complete genomehypothetical protein9e-23105
NC_016514:2476359:249945424994542499663210Enterobacter cloacae EcWSU1 chromosome, complete genomehypothetical protein5e-1786.7
NC_013850:2182337:220611322061132206313201Klebsiella variicola At-22 chromosome, complete genomehypothetical protein2e-1580.9
NC_014306:3524980:356294235629423563148207Erwinia billingiae Eb661, complete genomeConserved uncharacterized protein2e-1167.8
NC_020260:1615135:163016416301641630364201Cronobacter sakazakii Sp291, complete genomehypothetical protein2e-0961.2
NC_009778:1556222:157126215712621571456195Enterobacter sakazakii ATCC BAA-894, complete genomehypothetical protein9e-0958.9
NC_010468:2265423:227822022782202278498279Escherichia coli ATCC 8739, complete genomehypothetical protein2e-0858.2
NC_012947:2189533:219185021918502192128279Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completehypothetical protein9e-0855.8
NC_011601:1269500:128322212832221283500279Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomehypothetical protein1e-0651.6
NC_020181:2097066:210566921056692105872204Enterobacter aerogenes EA1509E, complete genomehypothetical protein3e-0650.8