Pre_GI: BLASTP Hits

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Query: NC_010673:703816:704645 Borrelia hermsii DAH, complete genome

Start: 704645, End: 706210, Length: 1566

Host Lineage: Borrelia hermsii; Borrelia; Spirochaetaceae; Spirochaetales; Spirochaetes; Bacteria

General Information: This strain was isolated from a case of relapsing fever in western Washington, USA. Borrelia hermsii is the causative agent of tick-borne relapsing fever in the western United States and Canada. Borrelia then multiplies rapidly, causing a generalized infection throughout the tick. While feeding, the tick passes the organism into a mammalian host through its infectious saliva. Relapsing fever is characterized by a period of chills, fever, headache, and malaise, an asymptomatic period, followed by another episode of symptoms. This cycle of relapsing is due to changes in the surface proteins of Borrelia, which allow it to avoid detection and removal by the host immune system. This antigenic variation is the result of homologous recombination of silent proteins into an expressed locus, causing partial or complete replacement of one serotype with another. These plasmids carry genes involved in antigenic variation and pathogenicity.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_006156:685344:7003217003217018861566Borrelia garinii PBi chromosome linear, complete sequencelysyl-tRNA synthetase0781
NC_016633:2688144:2705444270544427070181575Sphaerochaeta pleomorpha str. Grapes chromosome, complete genomelysyl-tRNA synthetase, archaeal and spirochete4e-149528
NC_015436:1758257:1758257175825717598491593Spirochaeta coccoides DSM 17374 chromosome, complete genomelysyl-tRNA synthetase1e-146520
NC_015732:2839030:2839030283903028406131584Spirochaeta caldaria DSM 7334 chromosome, complete genomeLysyl-tRNA synthetase6e-138491
NC_012804:1940500:1941193194119319427701578Thermococcus gammatolerans EJ3, complete genomeLysyl-tRNA synthetase (lysS)2e-98360
NC_006624:2016000:2030507203050720320871581Thermococcus kodakarensis KOD1, complete genomelysyl-tRNA synthetase5e-98358
NC_014804:803510:8200958200958216751581Thermococcus barophilus MP chromosome, complete genomelysyl-tRNA synthetase, class I6e-97355
NC_012883:104987:1204601204601220401581Thermococcus sibiricus MM 739, complete genomeLysyl-tRNA synthetase2e-94346
NC_015680:1475917:1489940148994014914991560Pyrococcus yayanosii CH1 chromosome, complete genomelysyl-tRNA synthetase1e-89330
NC_000868:196015:2120282120282136081581Pyrococcus abyssi GE5, complete genomelysyl-tRNA synthetase2e-89330
NC_015474:644552:6612546612546628251572Pyrococcus sp. NA2 chromosome, complete genomelysyl-tRNA synthetase2e-88327
NC_003413:128228:1446071446071461781572Pyrococcus furiosus DSM 3638, complete genomelysyl-tRNA synthetase4e-88325
NC_009012:3324000:3324051332405133256521602Clostridium thermocellum ATCC 27405, complete genomelysyl-tRNA synthetase2e-76287
NC_011661:938754:9522099522099537831575Dictyoglomus turgidum DSM 6724, complete genomelysyl-tRNA synthetase6e-71268
NC_011297:767333:7812697812697828431575Dictyoglomus thermophilum H-6-12, complete genomelysyl-tRNA synthetase3e-70266
NC_015416:1645419:1661739166173916632381500Methanosaeta concilii GP-6 chromosome, complete genomelysyl-tRNA synthetase1e-63244
NC_013156:728397:7387717387717403631593Methanocaldococcus fervens AG86, complete genomelysyl-tRNA synthetase1e-61238
NC_000909:467607:4748294748294764211593Methanocaldococcus jannaschii DSM 2661, complete genometRNA synthetase, putative5e-61235
NC_013407:1205747:1224796122479612263851590Methanocaldococcus vulcanius M7, complete genomelysyl-tRNA synthetase6e-61235
NC_015574:114426:1270091270091285861578Methanobacterium sp. SWAN-1 chromosome, complete genomeLysyl-tRNA synthetase3e-53209
NC_005213:63752:8253682536843231788Nanoarchaeum equitans Kin4-M, complete genomehypothetical protein2e-39164
NC_007643:578808:5919165919165935681653Rhodospirillum rubrum ATCC 11170, complete genomeLysine--tRNA ligase2e-25117
NC_009484:775828:7888817888817904401560Acidiphilium cryptum JF-5 chromosome, complete genomelysyl-tRNA synthetase6e-22105
NC_007798:652317:6885356885356900521518Neorickettsia sennetsu str. Miyayama, complete genomelysyl-tRNA synthetase1e-1998.6
NC_013009:689978:7064777064777079941518Neorickettsia risticii str. Illinois, complete genomelysyl-tRNA synthetase2e-1894.4