Pre_GI: BLASTP Hits

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Query: NC_010673:291679:305529 Borrelia hermsii DAH, complete genome

Start: 305529, End: 305987, Length: 459

Host Lineage: Borrelia hermsii; Borrelia; Spirochaetaceae; Spirochaetales; Spirochaetes; Bacteria

General Information: This strain was isolated from a case of relapsing fever in western Washington, USA. Borrelia hermsii is the causative agent of tick-borne relapsing fever in the western United States and Canada. Borrelia then multiplies rapidly, causing a generalized infection throughout the tick. While feeding, the tick passes the organism into a mammalian host through its infectious saliva. Relapsing fever is characterized by a period of chills, fever, headache, and malaise, an asymptomatic period, followed by another episode of symptoms. This cycle of relapsing is due to changes in the surface proteins of Borrelia, which allow it to avoid detection and removal by the host immune system. This antigenic variation is the result of homologous recombination of silent proteins into an expressed locus, causing partial or complete replacement of one serotype with another. These plasmids carry genes involved in antigenic variation and pathogenicity.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_008710:277207:304821304821305279459Borrelia turicatae 91E135, complete genomeflagellar basal-body rod protein FlgC1e-79294
NC_011244:319373:324747324747325211465Borrelia recurrentis A1, complete genomeflagellar basal body rod protein FlgC2e-79293
NC_017238:272980:301964301964302422459Borrelia afzelii PKo chromosome, complete genomeflagellar basal-body rod protein FlgC2e-73273
NC_014377:1060000:107295710729571073400444Thermosediminibacter oceani DSM 16646 chromosome, complete genomeflagellar basal-body rod protein FlgC1e-40165
NC_014721:434501:450534450534450977444Caldicellulosiruptor kristjanssonii 177R1B chromosome, completeflagellar basal-body rod protein flgc1e-32138
NC_011899:1807365:181121018112101811647438Halothermothrix orenii H 168, complete genomeflagellar basal-body rod protein FlgC1e-32138
NC_014652:628435:635199635199635642444Caldicellulosiruptor hydrothermalis 108 chromosome, completeflagellar basal-body rod protein flgc3e-32137
NC_010718:1454087:146195114619511462391441Natranaerobius thermophilus JW/NM-WN-LF, complete genomeflagellar basal-body rod protein FlgC3e-32137
NC_019978:625476:630996630996631421426Halobacteroides halobius DSM 5150, complete genomeflagellar basal-body rod protein FlgC3e-31134
NC_009012:574145:578416578416578859444Clostridium thermocellum ATCC 27405, complete genomeflagellar basal-body rod protein FlgC1e-31134
NC_020134:586840:591505591505591954450Clostridium stercorarium subsp. stercorarium DSM 8532, completeflagellar basal-body rod protein FlgC6e-31132
NC_014355:2210884:223293522329352233384450Candidatus Nitrospira defluvii, complete genomeflagellar basal-body rod protein FlgC5e-30129
NC_013642:1425795:143158314315831432005423Thermotoga naphthophila RKU-10, complete genomeflagellar basal-body rod protein FlgC2e-29127
NC_009633:2725128:273999027399902740433444Alkaliphilus metalliredigens QYMF chromosome, complete genomeflagellar basal-body rod protein FlgC4e-29127
NC_013939:492959:496483496483496887405Deferribacter desulfuricans SSM1, complete genomeflagellar basal-body rod protein FlgC5e-29126
NC_010483:1467616:147177214717721472194423Thermotoga sp. RQ2, complete genomeflagellar basal-body rod protein FlgC9e-29125
NC_009486:1403175:140733114073311407753423Thermotoga petrophila RKU-1 chromosome, complete genomeflagellar basal-body rod protein FlgC9e-29125
NC_013943:2431643:244664124466412447045405Denitrovibrio acetiphilus DSM 12809 chromosome, complete genomeflagellar basal-body rod protein FlgC2e-28124
NC_020291:4903981:493911349391134939520408Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomeflagellar basal-body rod protein FlgC2e-28124
NC_010424:1857062:185910218591021859521420Candidatus Desulforudis audaxviator MP104C, complete genomeflagellar basal-body rod protein FlgC2e-26118
NC_009617:4911595:492789249278924928299408Clostridium beijerinckii NCIMB 8052 chromosome, complete genomeflagellar basal body rod protein FlgC2e-26117
NC_008593:1103293:110884111088411109278438Clostridium novyi NT, complete genomeflagellar basal-body rod protein FlgC2e-26117
NC_017297:2854934:286278728627872863221435Clostridium botulinum F str. 230613 chromosome, complete genomeflagellar basal-body rod protein FlgC3e-26117
NC_009697:2714668:272778827277882728222435Clostridium botulinum A str. ATCC 19397 chromosome, completeflagellar basal body rod protein FlgC5e-26116
NC_009698:2649453:266471526647152665149435Clostridium botulinum A str. Hall chromosome, complete genomeflagellar basal body rod protein FlgC5e-26116
NC_012440:659646:673137673137673547411Persephonella marina EX-H1, complete genomeflagellar basal-body rod protein FlgC8e-26115
NC_007503:861668:876233876233876649417Carboxydothermus hydrogenoformans Z-2901, complete genomeflagellar basal-body rod protein FlgC3e-25114
NC_009253:2615777:263070126307012631138438Desulfotomaculum reducens MI-1 chromosome, complete genomeflagellar basal-body rod protein FlgC3e-25114
NC_010723:833870:835916835916836323408Clostridium botulinum E3 str. Alaska E43, complete genomeflagellar basal-body rod protein FlgC2e-24111
NC_015565:1920329:192063219206321921069438Desulfotomaculum carboxydivorans CO-1-SRB chromosome, completeflagellar basal-body rod protein FlgC5e-24109
NC_015391:2059191:208970520897052090142438Carnobacterium sp. 17-4 chromosome, complete genomeflagellar basal body rod protein FlgC6e-24109
NC_015589:1240197:126711912671191267556438Desulfotomaculum ruminis DSM 2154 chromosome, complete genomeflagellar basal-body rod protein FlgC2e-23107
NC_012962:3030726:303143730314373031841405Photorhabdus asymbiotica, complete genomeflagellar basal-body rod protein flgc (putative proximal rod protein)4e-22103
NC_014910:4026613:405071740507174051121405Alicycliphilus denitrificans BC chromosome, complete genomeflagellar basal-body rod protein flgc1e-21102
NC_015422:4395388:441898644189864419390405Alicycliphilus denitrificans K601 chromosome, complete genomeflagellar basal-body rod protein FlgC1e-21102
NC_014500:3071764:307244830724483072852405Dickeya dadantii 3937 chromosome, complete genomeflagellar basal-body rod protein flgC4e-21100
NC_009092:1504363:155509215550921555511420Shewanella loihica PV-4, complete genomeflagellar basal-body rod protein FlgC3e-2097.4
NC_015424:2917817:292654729265472926966420Aeromonas veronii B565 chromosome, complete genomeflagellar basal-body rod protein FlgC6e-1993.2
NC_013508:1289159:133351813335181333922405Edwardsiella tarda EIB202, complete genomeflagellar basal body rod protein1e-1891.7
NC_007963:2232000:223274722327472233154408Chromohalobacter salexigens DSM 3043, complete genomeflagellar basal-body rod protein FlgC3e-1890.9
NC_009997:3661083:366682536668253667241417Shewanella baltica OS195, complete genomeflagellar basal-body rod protein FlgC4e-1890.5
NC_012880:1765920:180897318089731809377405Dickeya dadantii Ech703, complete genomeflagellar basal-body rod protein FlgC5e-1889.7
NC_010334:1701957:172461817246181725034417Shewanella halifaxensis HAW-EB4, complete genomeflagellar basal-body rod protein FlgC7e-1889.4
NC_004344:26828:460314603146432402Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis,hypothetical protein1e-1789
NC_015966:2337833:237301323730132373513501Rhodothermus marinus SG0.5JP17-172 chromosome, complete genomeflagellar basal-body rod protein FlgC1e-1788.6
NC_016893:43234:472084720847606399Wigglesworthia glossinidia endosymbiont of Glossina morsitansflagellar component of cell-proximal portion of basal-body rod8e-1785.9
NC_007645:4195500:423162142316214232022402Hahella chejuensis KCTC 2396, complete genomeflagellar basal-body rod protein FlgC2e-1684.7
NC_009831:66518:790037900379422420Shewanella sediminis HAW-EB3, complete genomeflagellar basal-body rod protein FlgC2e-1684.3
NC_014032:3330596:333305233330523333552501Salinibacter ruber M8 chromosome, complete genomeflagellar basal-body rod protein flgC7e-1476.3
NC_016011:678419:696456696456696866411Listeria ivanovii subsp. ivanovii PAM 55, complete genomeputative flagellar basal-body rod protein FlgC9e-1475.9
NC_013891:640784:651718651718652128411Listeria seeligeri serovar 1/2b str. SLCC3954, complete genomeflagellar basal-body rod protein FlgC9e-1475.9
NC_008555:696217:707177707177707587411Listeria welshimeri serovar 6b str. SLCC5334, complete genomeflagellar basal-body rod protein FlgC2e-1375.1
NC_013093:2599591:260598126059812606379399Actinosynnema mirum DSM 43827, complete genomeprotein of unknown function DUF1078 domain protein2e-1375.1
NC_002973:730942:757483757483757893411Listeria monocytogenes str. 4b F2365, complete genomeflagellar basal body rod protein2e-1375.1
NC_003210:721824:742991742991743401411Listeria monocytogenes EGD-e, complete genomeflagellar basal body rod protein2e-1375.1
NC_003212:721112:742272742272742682411Listeria innocua Clip11262, complete genomeflagellar basal body rod protein2e-1375.1
NC_011660:1889504:190184919018491902259411Listeria monocytogenes HCC23 chromosome, complete genomeflagellar basal body rod protein FlgC2e-1375.1
NC_012488:732233:751475751475751885411Listeria monocytogenes Clip81459, complete genomeflagellar basal body rod protein FlgC2e-1375.1
NC_013766:757987:780514780514780924411Listeria monocytogenes 08-5578 chromosome, complete genomeflagellar basal body rod protein FlgC2e-1375.1
NC_013768:721897:747218747218747628411Listeria monocytogenes 08-5923, complete genomeflagellar basal body rod protein FlgC2e-1375.1
NC_009664:533021:554748554748555143396Kineococcus radiotolerans SRS30216, complete genomeprotein of unknown function DUF1078 domain protein4e-1270.5
NC_008209:253663:254075254075254464390Roseobacter denitrificans OCh 114, complete genomeflagellar basal-body rod protein FlgC3e-0960.8
NC_010520:2860960:287623728762372876670434Clostridium botulinum A3 str. Loch Maree, complete genome1e-0755.5