Pre_GI: BLASTP Hits

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Query: NC_010658:1193225:1213928 Shigella boydii CDC 3083-94, complete genome

Start: 1213928, End: 1214296, Length: 369

Host Lineage: Shigella boydii; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (strain BS512; serotype 18) was originally isolated from a 12-year-old boy in Arizona, USA by Dr. Nancy Stockbine. It is a member of Group 1 as determined by limited sequence analysis and can invade HeLa cells. Pathogenicity and virulence have been verified during in vitro experimentation, and multiple plasmids are present in this strain. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. Shigella spp. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This species is uncommon except in India, where it was first isolated. Progression to clinical dysentery occurs in most patients infected with this organism.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016902:2786000:278602827860282786396369Escherichia coli KO11FL chromosome, complete genomeFels-1 Propage domain protein1e-67254
AP010958:1339263:136004013600401360408369Escherichia coli O103:H2 str. 12009 DNA, complete genomeconserved predicted protein1e-67254
CP002185:1298675:131945213194521319820369Escherichia coli W, complete genomeputative fels-1 Prophage Protein1e-67254
NC_011748:1300863:132241713224171322785369Escherichia coli 55989, complete genomehypothetical protein1e-67254
CU928160:1232510:125328712532871253655369Escherichia coli IAI1 chromosome, complete genomeconserved hypothetical protein1e-67254
CU928145:1300863:132241713224171322785369Escherichia coli 55989 chromosome, complete genomeconserved hypothetical protein1e-67254
CP002516:2786000:278602827860282786396369Escherichia coli KO11, complete genomeFels-1 Propage domain protein1e-67254
NC_009801:1296488:131726513172651317633369Escherichia coli E24377A, complete genomeputative fels-1 Prophage Protein1e-67254
NC_011415:1273551:129432712943271294695369Escherichia coli SE11 chromosome, complete genomehypothetical protein1e-67254
NC_011741:1232510:125328712532871253655369Escherichia coli IAI1 chromosome, complete genomehypothetical protein1e-67254
NC_013353:1339263:136004013600401360408369Escherichia coli O103:H2 str. 12009, complete genomehypothetical protein1e-67254
NC_012759:1093764:111454411145441114912369Escherichia coli BW2952 chromosome, complete genomehypothetical protein2e-66250
NC_010473:1245284:126606412660641266432369Escherichia coli str. K-12 substr. DH10B, complete genomehypothetical protein2e-66250
NC_011751:1446073:147287714728771473245369Escherichia coli UMN026 chromosome, complete genomehypothetical protein4e-66249
NC_009800:1254409:127504912750491275417369Escherichia coli HS, complete genomeputative fels-1 Prophage Protein3e-66249
NC_013364:1477248:152144115214411521809369Escherichia coli O111:H- str. 11128, complete genomehypothetical protein6e-66248
NC_013361:1634226:165362916536291653997369Escherichia coli O26:H11 str. 11368 chromosome, complete genomehypothetical protein6e-66248
NC_004431:1443968:146459714645971464965369Escherichia coli CFT073, complete genomeHypothetical protein ycgJ precursor2e-65246
NC_007946:1280508:130003213000321300400369Escherichia coli UTI89, complete genomehypothetical protein YcgJ precursor2e-65246
NC_008563:1217804:123844012384401238808369Escherichia coli APEC O1, complete genomehypothetical protein2e-65246
NC_011742:1221416:124205212420521242420369Escherichia coli S88 chromosome, complete genomehypothetical protein2e-65246
NC_011745:1287714:130711313071131307481369Escherichia coli ED1a chromosome, complete genomehypothetical protein2e-65246
NC_008253:1228485:124778212477821248150369Escherichia coli 536, complete genomehypothetical protein YcgJ precursor7e-65245
NC_011601:1315746:133386713338671334235369Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomehypothetical protein9e-65244
NC_012967:1205985:122676112267611227129369Escherichia coli B str. REL606 chromosome, complete genomehypothetical protein1e-64244
NC_012947:2566754:256725825672582567626369Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completeFels-1 Propage domain protein1e-64244
NC_021066:1393750:139793713979371398272336Raoultella ornithinolytica B6, complete genomeFels-1 Propage domain-containing protein2e-24111
NC_016818:2836851:287709128770912877444354Rahnella aquatilis CIP 78.65 = ATCC 33071 chromosome, completeFels-1 Prophage Protein4e-0960.1