Pre_GI: BLASTP Hits

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Query: NC_010572:4585500:4602089 Streptomyces griseus subsp. griseus NBRC 13350, complete genome

Start: 4602089, End: 4603705, Length: 1617

Host Lineage: Streptomyces griseus; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Soil bacterium producing an antituberculosis agent. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_003888:4523500:4538504453850445399911488Streptomyces coelicolor A3(2), complete genomehypothetical protein6e-98358
NC_003155:5005913:5021723502172350233511629Streptomyces avermitilis MA-4680, complete genomehypothetical protein9e-98357
NC_012803:691215:7071737071737090771905Micrococcus luteus NCTC 2665, complete genometype IV secretory pathway, VirD4 component1e-28128
NC_013131:10322152:1035461310354613103564541842Catenulispora acidiphila DSM 44928, complete genomeconjugative transfer gene complex protein1e-28128
NC_019673:2051363:2049600204960020513661767Saccharothrix espanaensis DSM 44229 complete genomehypothetical protein3e-22107
NC_014830:3438504:3455500345550034572751776Intrasporangium calvum DSM 43043 chromosome, complete genomehypothetical protein4e-21103
NC_018532:166468:2135532135532152441692Arthrobacter sp. Rue61a plasmid p232, complete sequenceprotein, TraG family1e-20101
NC_013947:5747385:5766988576698857688231836Stackebrandtia nassauensis DSM 44728 chromosome, complete genomeType IV secretory pathway VirD4 protein-like protein3e-1790.5
NC_016943:1422926:1427177142717714290901914Blastococcus saxobsidens DD2, complete genomehypothetical protein3e-1687
NC_012803:3691:1490314903166871785Micrococcus luteus NCTC 2665, complete genomehypothetical protein6e-1582.8
NC_013757:729986:7311967311967331061911Geodermatophilus obscurus DSM 43160, complete genomeType IV secretory pathway VirD4 protein-like protein6e-1479.3
NC_014549:14000:3245132451342471797Arthrobacter arilaitensis Re117 plasmid pRE117-1, completeTraG-family bacterial conjugation protein5e-1272.8
NC_013929:2536255:2542598254259825443911794Streptomyces scabiei 87.22 chromosome, complete genomehypothetical protein2e-1170.9
NC_003888:7561923:7621458762145876231851728Streptomyces coelicolor A3(2), complete genomehypothetical protein4e-1170.1
NC_017955:3670670:3721026372102637225311506Modestobacter marinus, complete genometype IV secretory pathway VirD4-like9e-1168.9
NC_013929:3722867:3736306373630637381021797Streptomyces scabiei 87.22 chromosome, complete genomehypothetical protein1e-1068.6
NC_017955:3057592:3100018310001831015291512Modestobacter marinus, complete genomeconjugative transfer gene complex protein1e-1068.2
NC_018524:3075000:3087918308791830893121395Nocardiopsis alba ATCC BAA-2165 chromosome, complete genometype IV secretory system Conjugative DNA transfer family protein8e-1065.9
NC_018750:6070260:6092603609260360943991797Streptomyces venezuelae ATCC 10712, complete genomehypothetical protein2e-0860.8
NC_013729:2258582:2274288227428822766632376Kribbella flavida DSM 17836, complete genomeType IV secretory pathway VirD4 protein-like protein4e-0860.5