Pre_GI: BLASTP Hits

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Query: NC_010572:2216309:2220379 Streptomyces griseus subsp. griseus NBRC 13350, complete genome

Start: 2220379, End: 2221764, Length: 1386

Host Lineage: Streptomyces griseus; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Soil bacterium producing an antituberculosis agent. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009921:3316962:3327822332782233293871566Frankia sp. EAN1pec, complete genomeintegrase domain protein SAM domain protein1e-33144
NC_009921:3098271:3100139310013931014521314Frankia sp. EAN1pec, complete genomeconserved hypothetical protein3e-33143
NC_013595:151500:1696091696091710331425Streptosporangium roseum DSM 43021, complete genomeintegrase domain-containing protein2e-24114
NC_009720:583060:5946365946365960301395Xanthobacter autotrophicus Py2, complete genomeintegrase domain-containing protein5e-2099.4
NC_009668:445134:4935964935964950351440Ochrobactrum anthropi ATCC 49188 chromosome 2, complete sequencephage integrase domain/SAM domain-containing protein3e-1686.7
NC_008697:202000:215626215626216111486Nocardioides sp. JS614 plasmid pNOCA01, complete sequencehypothetical protein5e-0859.3