Pre_GI: BLASTP Hits

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Query: NC_010572:188500:205971 Streptomyces griseus subsp. griseus NBRC 13350, complete genome

Start: 205971, End: 207002, Length: 1032

Host Lineage: Streptomyces griseus; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Soil bacterium producing an antituberculosis agent. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_019673:359540:375554375554376519966Saccharothrix espanaensis DSM 44229 complete genomeEndonuclease/exonuclease/phosphatase2e-25116
NC_013947:1011899:101682110168211017804984Stackebrandtia nassauensis DSM 44728 chromosome, complete genomeEndonuclease/exonuclease/phosphatase4e-25115
NC_014158:1566310:156939515693951570333939Tsukamurella paurometabola DSM 20162 chromosome, complete genomeEndonuclease/exonuclease/phosphatase9e-22104
NC_018720:627642:6471796471796483451167Bifidobacterium asteroides PRL2011 chromosome, complete genomeendonuclease/exonuclease/phosphatase2e-21103
NC_013595:8603188:861129686112968612237942Streptosporangium roseum DSM 43021, complete genomeMetal-dependent hydrolase-like protein1e-1894.4
NC_008618:1729739:1751431175143117526241194Bifidobacterium adolescentis ATCC 15703, complete genomehypothetical protein1e-1791.3
NC_018720:417500:436611436611437573963Bifidobacterium asteroides PRL2011 chromosome, complete genomeendonuclease/exonuclease/phosphatase family protein1e-1480.9
NC_016604:1285277:129051912905191291514996Mycobacterium rhodesiae NBB3 chromosome, complete genomemetal-dependent hydrolase1e-1377.8
NC_008146:1016446:102240810224081023400993Mycobacterium sp. MCS, complete genomeEndonuclease/exonuclease/phosphatase2e-1377.4
NC_008705:1022252:102821410282141029206993Mycobacterium sp. KMS, complete genomeEndonuclease/exonuclease/phosphatase2e-1377.4
NC_008726:1776192:178114017811401782135996Mycobacterium vanbaalenii PYR-1, complete genomeEndonuclease/exonuclease/phosphatase4e-1272.8
NC_014644:1363445:1363445136344513645151071Gardnerella vaginalis ATCC 14019 chromosome, complete genomeendonuclease/exonuclease/phosphatase6e-1065.5