Pre_GI: BLASTP Hits

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Query: NC_010407:1114408:1119458 Clavibacter michiganensis subsp. sepedonicus chromosome, complete

Start: 1119458, End: 1120768, Length: 1311

Host Lineage: Clavibacter michiganensis; Clavibacter; Microbacteriaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Causative agent of bacterial ring rot. Isolated from infected potato. This organism was first described and classified in 1914 as "Bacterium sepedonicus" and is considered a major plant pathogen. It is a phytopathogenic actinomycete that causes wilt and tuber rot in potato, which is a plant vascular disease with very high bacterial titers. Pathogenicity is believed to be associated with the presence of two plasmids, pCSL1 and pCSL2. This species is subdivided into five subspecies: michiganensis, sepedonicus, nebraskensis, tesselarius and insidiosus each of which infects specific hosts: tomato, potato, corn, wheat and alfalfa, respectively. Members of the Clavibacter genus are known to produce antimicrobial compounds.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013929:6526745:6528735652873565301171383Streptomyces scabiei 87.22 chromosome, complete genomehypothetical protein1e-0861.2
NC_018524:2338000:2354716235471623560411326Nocardiopsis alba ATCC BAA-2165 chromosome, complete genometype VII secretion integral membrane protein EccD6e-0858.9