Pre_GI: BLASTP Hits

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Query: NC_010397:4533089:4535518 Mycobacterium abscessus chromosome Chromosome, complete sequence

Start: 4535518, End: 4536744, Length: 1227

Host Lineage: Mycobacterium abscessus; Mycobacterium; Mycobacteriaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Mycobacterium abscessus, formerly Mycobacterium chelonae subsp. abscessus, is a rapid-growing Mycobacterium sp., commonly isolated from soil and water. This organism causes a chronic lung infection, similar to tuberculosis, in patients with cystic fibrosis. Mycobacterium abscessus also causes wound and ear infections, and in immunosuppressed patients causes a generalized skin infection. This organism is very resistant to many commonly used antibiotics, which makes treatment difficult.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_014391:6640327:6640327664032766415471221Micromonospora aurantiaca ATCC 27029 chromosome, complete genomesigma-70 family RNA polymerase2e-87323
NC_014815:2639339:2649726264972626509461221Micromonospora sp. L5 chromosome, complete genomeRNA polymerase, sigma-24 subunit, ecf subfamily3e-87322
NC_019673:189487:2035772035772047401164Saccharothrix espanaensis DSM 44229 complete genomehypothetical protein3e-73275
NC_017093:6461486:6481348648134864826281281Actinoplanes missouriensis 431, complete genomeputative RNA polymerase ECF-subfamily sigma factor6e-70265
NC_013729:4835452:4850986485098648522211236Kribbella flavida DSM 17836, complete genomeputative RNA polymerase, sigma-24 subunit, ECF subfamily4e-69262
NC_008027:4280000:4283709428370942849471239Pseudomonas entomophila L48, complete genomeRNA polymerase sigma-70 factor, ECF subfamily1e-68260
NC_018681:867230:8660168660168672331218Nocardia brasiliensis ATCC 700358 chromosome, complete genomeRNA polymerase ECF-type sigma factor4e-65249
NC_018750:4728870:4732837473283747340781242Streptomyces venezuelae ATCC 10712, complete genomeRNA polymerase sigma-70 factor, ECF subfamily8e-63241
NC_015434:5434500:5449124544912454503471224Verrucosispora maris AB-18-032 chromosome, complete genomeputative RNA polymerase, sigma-24 subunit, ECF subfamily protein2e-61236
NC_014623:8930235:8943502894350289447731272Stigmatella aurantiaca DW4/3-1 chromosome, complete genomeECF subfamily RNA polymerase sigma-70 factor4e-61235
NC_014210:2277971:2296055229605522973741320Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,putative RNA polymerase, sigma-24 subunit, ECF subfamily2e-56220
NC_017955:3731480:3820291382029138215471257Modestobacter marinus, complete genomeRNA polymerase sigma factor3e-55216
NC_017249:60216:8004680046813261281Bradyrhizobium japonicum USDA 6, complete genomehypothetical protein8e-54211
NC_013159:1885985:1890369189036918916551287Saccharomonospora viridis DSM 43017, complete genomeRNA polymerase, sigma subunit, ECF family1e-53211
NC_016591:202342:2164152164152176861272Burkholderia sp. YI23 plasmid byi_2p, complete sequencehypothetical protein3e-52206
NC_004463:60225:7851178511798031293Bradyrhizobium japonicum USDA 110, complete genomehypothetical protein3e-52206
NC_019673:1384795:1390302139030213915101209Saccharothrix espanaensis DSM 44229 complete genomehypothetical protein7e-50198
NC_009380:3043140:3057393305739330587031311Salinispora tropica CNB-440 chromosome, complete genomesigma-70 region 4 domain-containing protein3e-49196
NC_008699:2260606:2262345226234522636131269Nocardioides sp. JS614, complete genomesigma-70 region 2 domain protein1e-48194
NC_018681:441014:4615964615964628731278Nocardia brasiliensis ATCC 700358 chromosome, complete genomesigma factor1e-46187
NC_015711:8852850:8869566886956688708461281Myxococcus fulvus HW-1 chromosome, complete genomeECF subfamily RNA polymerase sigma factor2e-45183
NC_014623:10036628:1005204710052047100533331287Stigmatella aurantiaca DW4/3-1 chromosome, complete genomeRNA polymerase sigma-70 factor1e-42174
NC_014391:3596812:3596812359681235978461035Micromonospora aurantiaca ATCC 27029 chromosome, complete genomeSigma-70 region 4 type 29e-41167
NC_008255:2839147:2846183284618328474331251Cytophaga hutchinsonii ATCC 33406, complete genomeprobable sigma-70 factor, ECF subfamily2e-36153
NC_013889:1623697:1623697162369716250131317Thioalkalivibrio sp. K90mix chromosome, complete genomeputative RNA polymerase, sigma-24 subunit, ECF subfamily3e-36153
NC_019902:3644000:3645711364571136470721362Thioalkalivibrio nitratireducens DSM 14787, complete genomeRNA polymerase sigma-70 factor, ECF subfamily7e-35148
NC_019904:5130458:5137186513718651384301245Echinicola vietnamensis DSM 17526 chromosome, complete genomeRNA polymerase sigma factor containing a TPR repeat domain4e-34145
NC_017030:158947:1621281621281633691242Corallococcus coralloides DSM 2259 chromosome, complete genomeRNA polymerase sigma-70 factor2C ECF subfamily2e-29130
NC_006361:1547034:1565536156553615667681233Nocardia farcinica IFM 10152, complete genomeputative sigma factor1e-28127
NC_018524:4988810:501475850147585015384627Nocardiopsis alba ATCC BAA-2165 chromosome, complete genomesigma-70 region 2 family protein1e-0758.2