Pre_GI: BLASTP Hits

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Query: NC_010322:768849:776862 Pseudomonas putida GB-1 chromosome, complete genome

Start: 776862, End: 777506, Length: 645

Host Lineage: Pseudomonas putida; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Pseudomonas putida strain GB-1, a fresh water, Gram-negative gamma-proteobacterium, is a genetically tractable, robust manganese (Mn) oxidizer, and as such, is an ideal model for unraveling the catalytic mechanism for, and the molecular regulation of Mn(IV) oxide production and its eventual accumulation on the cell surface at the onset of stationary phase. Since its isolation from Green Bay nearly 20 years ago by Ken Nealson’s group (then at the Center for Great Lakes Studies, Univ. Wisconsin-Milwaukee, USA), it has been the non spore-forming, model organism (along with the closely-related strain MnB1) for molecular genetic studies of Mn(II) oxidization, protein transport and biofilm formation and for biochemical studies on protein purification and Mn(III)-pyoverdine binding. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. As they are metabolically versatile, and well characterized, it makes them great candidates for biocatalysis, bioremediation and other agricultural applications. Certain strains have been used in the production of bioplastics.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_007404:974461:986128986128987105978Thiobacillus denitrificans ATCC 25259, complete genomehypothetical protein5e-57220
NC_008781:2611702:263449726344972635378882Polaromonas naphthalenivorans CJ2, complete genomehypothetical protein4e-34144
NC_015422:910292:926187926187926537351Alicycliphilus denitrificans K601 chromosome, complete genome1e-23109
NC_013193:38918:448194481945730912Candidatus Accumulibacter phosphatis clade IIA str. UW-1 plasmidhypothetical protein1e-22106
NC_008758:12000:3116331163321761014Polaromonas naphthalenivorans CJ2 plasmid pPNAP02, completeTrfA2e-21102
NC_010814:294394:305287305287306126840Geobacter lovleyi SZ, complete genomeTrfA family protein2e-2099
NC_002939:2315402:238573123857312386570840Geobacter sulfurreducens PCA, complete genometrfA-related protein2e-1892.4
NC_002939:2337402:238573123857312386570840Geobacter sulfurreducens PCA, complete genometrfA-related protein2e-1892.4
NC_008609:251608:266623266623267450828Pelobacter propionicus DSM 2379, complete genomeTrfA family protein3e-1892
NC_008341:29038:290382903830006969Nitrosomonas eutropha C91 plasmid1, complete sequenceTrfA family protein2e-1168.9
NC_009656:5505413:552338955233895524288900Pseudomonas aeruginosa PA7 chromosome, complete genomeTrfA family protein3e-0962
NC_014836:1551965:156100515610051561862858Desulfurispirillum indicum S5 chromosome, complete genomeTrfA family protein8e-0753.9
NC_008800:1300500:132150213215021322389888Yersinia enterocolitica subsp. enterocolitica 8081 chromosome,putative plasmid-related transcriptional repressor protein4e-0651.6