Pre_GI: BLASTP Hits

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Query: NC_010322:583842:604310 Pseudomonas putida GB-1 chromosome, complete genome

Start: 604310, End: 605011, Length: 702

Host Lineage: Pseudomonas putida; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Pseudomonas putida strain GB-1, a fresh water, Gram-negative gamma-proteobacterium, is a genetically tractable, robust manganese (Mn) oxidizer, and as such, is an ideal model for unraveling the catalytic mechanism for, and the molecular regulation of Mn(IV) oxide production and its eventual accumulation on the cell surface at the onset of stationary phase. Since its isolation from Green Bay nearly 20 years ago by Ken Nealson’s group (then at the Center for Great Lakes Studies, Univ. Wisconsin-Milwaukee, USA), it has been the non spore-forming, model organism (along with the closely-related strain MnB1) for molecular genetic studies of Mn(II) oxidization, protein transport and biofilm formation and for biochemical studies on protein purification and Mn(III)-pyoverdine binding. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. As they are metabolically versatile, and well characterized, it makes them great candidates for biocatalysis, bioremediation and other agricultural applications. Certain strains have been used in the production of bioplastics.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_020829:636773:651266651266651757492Pseudomonas denitrificans ATCC 13867, complete genomehypothetical protein3e-79294
NC_013522:1538994:154702715470271547734708Thermanaerovibrio acidaminovorans DSM 6589, complete genomehypothetical protein7e-58223
NC_019904:2327842:233917223391722339864693Echinicola vietnamensis DSM 17526 chromosome, complete genomehypothetical protein3e-46184
NC_008782:2326439:234061023406102341302693Acidovorax sp. JS42, complete genomehypothetical protein8e-45180
NC_007760:4055860:406821940682194068959741Anaeromyxobacter dehalogenans 2CP-C, complete genomehypothetical protein7e-39160
NC_007964:2762000:276535727653572766118762Nitrobacter hamburgensis X14, complete genomehypothetical protein7e-1684.3