Pre_GI: BLASTP Hits

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Query: NC_010322:4623867:4662495 Pseudomonas putida GB-1 chromosome, complete genome

Start: 4662495, End: 4663325, Length: 831

Host Lineage: Pseudomonas putida; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Pseudomonas putida strain GB-1, a fresh water, Gram-negative gamma-proteobacterium, is a genetically tractable, robust manganese (Mn) oxidizer, and as such, is an ideal model for unraveling the catalytic mechanism for, and the molecular regulation of Mn(IV) oxide production and its eventual accumulation on the cell surface at the onset of stationary phase. Since its isolation from Green Bay nearly 20 years ago by Ken Nealson’s group (then at the Center for Great Lakes Studies, Univ. Wisconsin-Milwaukee, USA), it has been the non spore-forming, model organism (along with the closely-related strain MnB1) for molecular genetic studies of Mn(II) oxidization, protein transport and biofilm formation and for biochemical studies on protein purification and Mn(III)-pyoverdine binding. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. As they are metabolically versatile, and well characterized, it makes them great candidates for biocatalysis, bioremediation and other agricultural applications. Certain strains have been used in the production of bioplastics.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_020126:1873794:1884444188444418878483405Myxococcus stipitatus DSM 14675, complete genomehypothetical protein8e-26117
NC_009720:4406991:443098644309864431774789Xanthobacter autotrophicus Py2, complete genomehypothetical protein5e-1581.6
NC_015320:743983:754481754481755221741Archaeoglobus veneficus SNP6 chromosome, complete genomehypothetical protein4e-1478.6
NC_004463:60225:6894168941703651425Bradyrhizobium japonicum USDA 110, complete genomehypothetical protein1e-1377.4
NC_008577:2604281:261531626153162616128813Shewanella sp. ANA-3 chromosome 1, complete sequencehypothetical protein1e-1377
NC_014098:3008951:301942630194263020202777Bacillus tusciae DSM 2912 chromosome, complete genomehypothetical protein2e-0963.5
NC_011002:772243:789813789813790787975Burkholderia cenocepacia J2315 chromosome 3, complete sequence3e-0962.4
NC_019673:6473743:6475737647573764785112775Saccharothrix espanaensis DSM 44229 complete genomehypothetical protein9e-0960.8
NC_013958:29548:4374243742448061065Nitrosococcus halophilus Nc4 plasmid pNHAL01, complete sequencehypothetical protein1e-0860.5
NC_018531:3983925:399530339953033996172870Arthrobacter sp. Rue61a chromosome, complete genomehypothetical protein5e-0858.5
NC_015635:5511994:552894255289425529649708Microlunatus phosphovorus NM-1, complete genomehypothetical protein9e-0857.8
NC_015977:2874000:288420028842002885015816Roseburia hominis A2-183 chromosome, complete genomehypothetical protein1e-0757.4
NC_019012:61360:7747877478787191242Fibrella aestuarina BUZ 2 plasmid pFAES01, complete sequencehypothetical protein5e-0755.1
NC_016631:3917253:3942622394262239463863765Granulicella mallensis MP5ACTX8 chromosome, complete genomehypothetical protein7e-0754.7
NC_017249:60216:6467464674658011128Bradyrhizobium japonicum USDA 6, complete genomehypothetical protein1e-0653.9
NC_004463:60225:6467464674658101137Bradyrhizobium japonicum USDA 110, complete genomehypothetical protein1e-0653.9