Pre_GI: BLASTP Hits

Some Help

Query: NC_010322:3831444:3841645 Pseudomonas putida GB-1 chromosome, complete genome

Start: 3841645, End: 3842304, Length: 660

Host Lineage: Pseudomonas putida; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Pseudomonas putida strain GB-1, a fresh water, Gram-negative gamma-proteobacterium, is a genetically tractable, robust manganese (Mn) oxidizer, and as such, is an ideal model for unraveling the catalytic mechanism for, and the molecular regulation of Mn(IV) oxide production and its eventual accumulation on the cell surface at the onset of stationary phase. Since its isolation from Green Bay nearly 20 years ago by Ken Nealson’s group (then at the Center for Great Lakes Studies, Univ. Wisconsin-Milwaukee, USA), it has been the non spore-forming, model organism (along with the closely-related strain MnB1) for molecular genetic studies of Mn(II) oxidization, protein transport and biofilm formation and for biochemical studies on protein purification and Mn(III)-pyoverdine binding. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. As they are metabolically versatile, and well characterized, it makes them great candidates for biocatalysis, bioremediation and other agricultural applications. Certain strains have been used in the production of bioplastics.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_006371:1411335:142807714280771428715639Photobacterium profundum SS9 chromosome 2, complete sequencehypothetical protein4e-33140
NC_010645:1523867:152386715238671524514648Bordetella avium 197N, complete genomemajor tail protein2e-31135
NC_010002:3547958:355373735537373554423687Delftia acidovorans SPH-1, complete genometail protein 36e-25114
NC_017223:3608749:362640036264003626918519Bordetella pertussis CS chromosome, complete genomehypothetical protein2e-23109
NC_002929:3568106:358621535862153586733519Bordetella pertussis Tohama I, complete genomehypothetical protein2e-23109
NC_002927:3716894:373723537372353737750516Bordetella bronchiseptica RB50, complete genomehypothetical protein2e-23108
NC_002927:2338549:236201623620162362531516Bordetella bronchiseptica RB50, complete genomehypothetical protein2e-23108
NC_016612:4119410:412827041282704128932663Klebsiella oxytoca KCTC 1686 chromosome, complete genomehypothetical protein2e-1789.4
NC_014640:4293430:431486643148664315522657Achromobacter xylosoxidans A8 chromosome, complete genomephage tail family protein 18e-1787
NC_010554:539122:555076555076555732657Proteus mirabilis HI4320, complete genomephage protein4e-1065.1