Pre_GI: BLASTP Hits

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Query: NC_010322:29983:44635 Pseudomonas putida GB-1 chromosome, complete genome

Start: 44635, End: 44961, Length: 327

Host Lineage: Pseudomonas putida; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Pseudomonas putida strain GB-1, a fresh water, Gram-negative gamma-proteobacterium, is a genetically tractable, robust manganese (Mn) oxidizer, and as such, is an ideal model for unraveling the catalytic mechanism for, and the molecular regulation of Mn(IV) oxide production and its eventual accumulation on the cell surface at the onset of stationary phase. Since its isolation from Green Bay nearly 20 years ago by Ken Nealson’s group (then at the Center for Great Lakes Studies, Univ. Wisconsin-Milwaukee, USA), it has been the non spore-forming, model organism (along with the closely-related strain MnB1) for molecular genetic studies of Mn(II) oxidization, protein transport and biofilm formation and for biochemical studies on protein purification and Mn(III)-pyoverdine binding. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. As they are metabolically versatile, and well characterized, it makes them great candidates for biocatalysis, bioremediation and other agricultural applications. Certain strains have been used in the production of bioplastics.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010501:30000:485694856948895327Pseudomonas putida W619, complete genomehypothetical protein6e-59225
NC_009512:27783:438534385344179327Pseudomonas putida F1, complete genomehypothetical protein6e-59225
NC_017986:2548720:257805525780552578381327Pseudomonas putida ND6 chromosome, complete genomehypothetical protein8e-58221
NC_002947:8394:318773187732203327Pseudomonas putida KT2440, complete genomehypothetical protein1e-57221
NC_015733:5909821:593430759343075934633327Pseudomonas putida S16 chromosome, complete genomehypothetical protein4e-48189
NC_017986:2548720:259190225919022592225324Pseudomonas putida ND6 chromosome, complete genomehypothetical protein8e-1475.9
NC_010322:29983:584855848558808324Pseudomonas putida GB-1 chromosome, complete genomehypothetical protein8e-1475.9
NC_010501:30000:624196241962742324Pseudomonas putida W619, complete genomehypothetical protein8e-1475.9
NC_009512:27783:577035770358026324Pseudomonas putida F1, complete genomehypothetical protein8e-1475.9
NC_015733:5909821:593949659394965939819324Pseudomonas putida S16 chromosome, complete genomehypothetical protein1e-1375.1
NC_002947:8394:457274572745939213Pseudomonas putida KT2440, complete genomehypothetical protein5e-1269.7
NC_009439:1297851:131178313117831312130348Pseudomonas mendocina ymp, complete genomehypothetical protein4e-1167
NC_002947:6123608:612879661287966129128333Pseudomonas putida KT2440, complete genomehypothetical protein5e-0959.7
NC_009434:3611738:364843236484323648761330Pseudomonas stutzeri A1501, complete genomehypothetical protein2e-0754.7
NC_009439:2427120:244899224489922449324333Pseudomonas mendocina ymp, complete genomehypothetical protein2e-0754.3
NC_010322:1:145221452214854333Pseudomonas putida GB-1 chromosome, complete genomehypothetical protein2e-0754.3
NC_009512:1:137401374014072333Pseudomonas putida F1, complete genomehypothetical protein2e-0754.3
NC_010501:1:137601376014092333Pseudomonas putida W619, complete genomehypothetical protein2e-0754.3