Pre_GI: BLASTP Hits

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Query: NC_010322:29983:36052 Pseudomonas putida GB-1 chromosome, complete genome

Start: 36052, End: 37248, Length: 1197

Host Lineage: Pseudomonas putida; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Pseudomonas putida strain GB-1, a fresh water, Gram-negative gamma-proteobacterium, is a genetically tractable, robust manganese (Mn) oxidizer, and as such, is an ideal model for unraveling the catalytic mechanism for, and the molecular regulation of Mn(IV) oxide production and its eventual accumulation on the cell surface at the onset of stationary phase. Since its isolation from Green Bay nearly 20 years ago by Ken Nealson’s group (then at the Center for Great Lakes Studies, Univ. Wisconsin-Milwaukee, USA), it has been the non spore-forming, model organism (along with the closely-related strain MnB1) for molecular genetic studies of Mn(II) oxidization, protein transport and biofilm formation and for biochemical studies on protein purification and Mn(III)-pyoverdine binding. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. As they are metabolically versatile, and well characterized, it makes them great candidates for biocatalysis, bioremediation and other agricultural applications. Certain strains have been used in the production of bioplastics.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009512:27783:3543235432364661035Pseudomonas putida F1, complete genomehypothetical protein0667
NC_010501:30000:356793567936488810Pseudomonas putida W619, complete genomehypothetical protein1e-144513
NC_008542:2631138:2639179263917926404921314Burkholderia cenocepacia HI2424 chromosome 1, complete sequencehypothetical protein2e-0963.5
NC_008060:1945597:1953638195363819549511314Burkholderia cenocepacia AU 1054 chromosome 1, complete sequencehypothetical protein2e-0963.5
NC_007517:2870657:2881714288171428827421029Geobacter metallireducens GS-15, complete genomeATP-binding region, ATPase-like4e-0962.8
NC_008700:3692333:3700897370089737022071311Shewanella amazonensis SB2B, complete genomeconserved hypothetical protein5e-0755.8
NC_006270:3418097:3428686342868634297081023Bacillus licheniformis ATCC 14580, complete genomehypothetical protein1e-0654.7
NC_006322:3418268:3428858342885834298801023Bacillus licheniformis ATCC 14580, complete genomehypothetical protein1e-0654.7