Pre_GI: BLASTP Hits

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Query: NC_010322:29983:30878 Pseudomonas putida GB-1 chromosome, complete genome

Start: 30878, End: 31900, Length: 1023

Host Lineage: Pseudomonas putida; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Pseudomonas putida strain GB-1, a fresh water, Gram-negative gamma-proteobacterium, is a genetically tractable, robust manganese (Mn) oxidizer, and as such, is an ideal model for unraveling the catalytic mechanism for, and the molecular regulation of Mn(IV) oxide production and its eventual accumulation on the cell surface at the onset of stationary phase. Since its isolation from Green Bay nearly 20 years ago by Ken Nealson’s group (then at the Center for Great Lakes Studies, Univ. Wisconsin-Milwaukee, USA), it has been the non spore-forming, model organism (along with the closely-related strain MnB1) for molecular genetic studies of Mn(II) oxidization, protein transport and biofilm formation and for biochemical studies on protein purification and Mn(III)-pyoverdine binding. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. As they are metabolically versatile, and well characterized, it makes them great candidates for biocatalysis, bioremediation and other agricultural applications. Certain strains have been used in the production of bioplastics.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010501:30000:3011630116311381023Pseudomonas putida W619, complete genome40-residue YVTN family beta-propeller repeat protein0677
NC_009512:27783:3009630096311181023Pseudomonas putida F1, complete genome40-residue YVTN family beta-propeller repeat protein0677
NC_008344:49039:6488964889659381050Nitrosomonas eutropha C91, complete genome40-residue YVTN family beta-propeller repeat protein4e-83308
NC_015422:2858228:2876953287695328779991047Alicycliphilus denitrificans K601 chromosome, complete genome40-residue YVTN family beta-propeller repeat-containing protein3e-70265
NC_008782:1510000:1529246152924615302921047Acidovorax sp. JS42, complete genome40-residue YVTN family beta-propeller repeat protein2e-69263
NC_016593:981500:9891879891879902571071Geobacillus thermoleovorans CCB_US3_UF5 chromosome, completebeta-propeller fold protein1e-55217
NC_020210:788639:8122298122298132991071Geobacillus sp. GHH01, complete genomebeta-propeller fold protein5e-55214
NC_006510:887545:9173069173069183761071Geobacillus kaustophilus HTA426, complete genomebeta-propeller fold protein1e-54214
NC_017295:2630179:2643632264363226446901059Clostridium acetobutylicum EA 2018 chromosome, complete genomeprotein of beta-propeller fold protein1e-43177
NC_003030:2630931:2644386264438626454441059Clostridium acetobutylicum ATCC 824, complete genomePredicted protein of beta-propeller fold1e-43177
NC_015687:2632557:2646012264601226470701059Clostridium acetobutylicum DSM 1731 chromosome, complete genomebeta-propeller fold protein1e-43177
NC_013665:918313:9259559259559270131059Methanocella paludicola SANAE, complete genomeputative cell surface protein1e-32140
NC_007355:970670:9786529786529819363285Methanosarcina barkeri str. fusaro chromosome 1, complete sequenceputative surface layer protein3e-31135
NC_003552:3862275:3878798387879838801351338Methanosarcina acetivorans C2A, complete genomesurface antigen gene1e-29130
NC_020389:1730376:1739312173931217425843273Methanosarcina mazei Tuc01, complete genomehypothetical protein3e-29129
NC_003552:3862275:3874976387497638764391464Methanosarcina acetivorans C2A, complete genomesurface antigen gene6e-28125
NC_007947:2447635:245758224575822458535954Methylobacillus flagellatus KT, complete genome40-residue YVTN beta-propeller repeat6e-25115
NC_020389:415500:4163934163934177361344Methanosarcina mazei Tuc01, complete genomehypothetical protein7e-24111
NC_003901:500500:5005395005395018161278Methanosarcina mazei Go1, complete genomeputative surface layer protein7e-24111
NC_020389:415500:4302094302094316421434Methanosarcina mazei Tuc01, complete genomehypothetical protein1e-23110
NC_003901:500500:5162675162675177001434Methanosarcina mazei Go1, complete genomeputative surface layer protein1e-23110
NC_013595:6978614:6985665698566569873351671Streptosporangium roseum DSM 43021, complete genomehypothetical protein8e-23108
NC_010505:5583000:558442555844255585408984Methylobacterium radiotolerans JCM 2831, complete genome40-residue YVTN family beta-propeller repeat protein6e-23108
NC_009464:300422:3220853220853253183234Uncultured methanogenic archaeon RC-I, complete genomehypothetical protein2e-22106
NC_008278:5855401:5857482585748258609313450Frankia alni ACN14a, complete genomeGlycine-rich cell wall structural protein precursor (partial match)3e-22106
NC_019673:2671458:2690524269052426918521329Saccharothrix espanaensis DSM 44229 complete genomeYVTN family beta-propeller repeat protein3e-22106
NC_010524:3445641:344471234447123445644933Leptothrix cholodnii SP-6, complete genome40-residue YVTN family beta-propeller repeat protein8e-22104
NC_003552:576500:5913595913595928071449Methanosarcina acetivorans C2A, complete genomesurface antigen gene3e-21102
NC_017093:3777178:3798474379847438027454272Actinoplanes missouriensis 431, complete genomehypothetical protein1e-20100
NC_003901:2533000:2561438256143825628981461Methanosarcina mazei Go1, complete genomehypothetical protein1e-20100
NC_009921:5275694:5278279527827952817913513Frankia sp. EAN1pec, complete genome40-residue YVTN family beta-propeller repeat protein5e-2098.6
NC_015723:1047418:1065686106568610667141029Cupriavidus necator N-1 chromosome 2, complete sequencehypothetical protein8e-2098.2
NC_015656:381554:3958773958773991133237Frankia symbiont of Datisca glomerata chromosome, complete genome40-residue YVTN family beta-propeller repeat-containing protein1e-1997.4
NC_013093:1909305:1919236191923619205911356Actinosynnema mirum DSM 43827, complete genome40-residue YVTN family beta-propeller repeat protein1e-1997.4
NC_015656:454500:4642344642344654241191Frankia symbiont of Datisca glomerata chromosome, complete genome40-residue YVTN family beta-propeller repeat-containing protein2e-1997.1
NC_008343:1548020:1552871155287115539111041Granulibacter bethesdensis CGDNIH1, complete genomePGRS-subfamily of Gly-rich proteins2e-1997.1
NC_003901:500500:5074305074305086891260Methanosarcina mazei Go1, complete genomeputative surface layer protein2e-1996.7
NC_020389:415500:4232174232174244761260Methanosarcina mazei Tuc01, complete genomeSurface layer protein2e-1996.7
NC_011758:369704:444414831440Methylobacterium chloromethanicum CM4 plasmid pMCHL01, complete40-residue YVTN family beta-propeller repeat protein3e-1996.3
NC_009441:3597020:3631610363161036326801071Flavobacterium johnsoniae UW101 chromosome, complete genomeYVTN beta-propeller repeat-containing protein1e-1894
NC_009483:4434375:4473362447336244751851824Geobacter uraniireducens Rf4 chromosome, complete genomeYVTN beta-propeller repeat-containing protein2e-1893.2
NC_015572:2541968:254196825419682542918951Methylomonas methanica MC09 chromosome, complete genome40-residue YVTN family beta-propeller repeat protein3e-1893.2
NC_009720:2945655:2957635295763529590711437Xanthobacter autotrophicus Py2, complete genomeYVTN beta-propeller repeat-containing protein6e-1891.7
NC_009720:251703:2644702644702659061437Xanthobacter autotrophicus Py2, complete genomeYVTN beta-propeller repeat-containing protein6e-1891.7
NC_011979:1590432:1590432159043215923691938Geobacter sp. FRC-32, complete genomeYVTN family beta-propeller repeat protein2e-1790.5
NC_009952:442029:469158469158470129972Dinoroseobacter shibae DFL 12, complete genome40-residue YVTN family beta-propeller repeat protein2e-1790.1
NC_016589:2824164:285097628509762851923948Burkholderia sp. YI23 chromosome 1, complete sequencehypothetical protein2e-1687
NC_014375:1242750:1257417125741712588561440Brevundimonas subvibrioides ATCC 15264 chromosome, complete genome40-residue YVTN family beta-propeller repeat protein3e-1686.3
NC_004578:5192110:5206737520673752077771041Pseudomonas syringae pv. tomato str. DC3000, complete genomehypothetical protein1e-1584
NC_007907:4500000:4500121450012145015091389Desulfitobacterium hafniense Y51, complete genomehypothetical protein2e-1583.6
NC_007005:1636875:166618216661821667174993Pseudomonas syringae pv. syringae B728a, complete genomehypothetical protein2e-1583.2
NC_012660:2045398:207024620702462071238993Pseudomonas fluorescens SBW25 chromosome, complete genomehypothetical protein3e-1582.8
NC_016816:4129299:415965141596514160649999Pantoea ananatis LMG 5342, complete genomevegetative incompatibility protein HET-E-13e-1582.8
NC_014304:77715:982519825199249999Erwinia billingiae Eb661 plasmid pEB102, complete sequenceconserved uncharacterized protein7e-1581.6
NC_021182:4829000:4846648484664848480811434Clostridium pasteurianum BC1, complete genomeYVTN family beta-propeller repeat protein4e-1479.3
NC_014540:1835493:1853944185394418554221479Burkholderia sp. CCGE1003 chromosome 2, complete sequence40-residue YVTN family beta-propeller repeat-containing protein1e-1377.4
NC_006087:2326143:233450023345002335225726Leifsonia xyli subsp. xyli str. CTCB07, complete genomemembrane protein2e-1377
NC_011146:1293202:1293202129320212946051404Geobacter bemidjiensis Bem, complete genome40-residue YVTN family beta-propeller repeat protein2e-1273.6
NC_015723:1347946:1348429134842913498081380Cupriavidus necator N-1 chromosome 2, complete sequencehypothetical protein7e-1271.6
NC_003552:3862275:3872784387278438738181035Methanosarcina acetivorans C2A, complete genomesurface antigen gene9e-1271.2
NC_009328:2083386:208830020883002088806507Geobacillus thermodenitrificans NG80-2 chromosome, complete genomesurface antigen gene1e-1170.9
NC_014623:5617655:5634509563450956365031995Stigmatella aurantiaca DW4/3-1 chromosome, complete genomehypothetical protein2e-1170.5
NC_017179:3621306:363888536388853639751867Clostridium difficile BI1, complete genomehypothetical protein5e-1168.9
NC_013315:3613288:363086736308673631733867Clostridium difficile CD196 chromosome, complete genomehypothetical protein5e-1168.9
NC_015065:162317:1898301898301908491020Acidobacterium sp. MP5ACTX9 plasmid pACIX902, complete sequenceYVTN family beta-propeller repeat protein5e-1168.9
NC_017026:1095753:1095753109575310971291377Mycobacterium tuberculosis RGTB327 chromosome, complete genomePE-PGRS family protein3e-1066.2
NC_009525:1096386:1096386109638610977591374Mycobacterium tuberculosis H37Ra, complete genomePE-PGRS family protein4e-1065.9
NC_012943:3299744:3315516331551633168891374Mycobacterium tuberculosis KZN 1435 chromosome, complete genomePE-PGRS family protein4e-1065.9
NC_009565:1098847:1098847109884711002201374Mycobacterium tuberculosis F11, complete genomePE-PGRS family protein4e-1065.9
NC_012207:1097228:1097228109722810986011374Mycobacterium bovis BCG str. Tokyo 172, complete genomePE-PGRS family protein4e-1065.9
NC_008769:1125567:1125567112556711269401374Mycobacterium bovis BCG str. Pasteur 1173P2, complete genomePE-PGRS family protein4e-1065.9
NC_016804:1095846:1095846109584610972191374Mycobacterium bovis BCG str. Mexico chromosome, complete genomePE-PGRS family protein4e-1065.9
NC_008781:2925818:2928552292855229295771026Polaromonas naphthalenivorans CJ2, complete genome40-residue YVTN family beta-propeller repeat protein4e-1065.9
NC_000962:1095078:1095078109507810964511374Mycobacterium tuberculosis H37Rv, complete genomePE-PGRS FAMILY PROTEIN4e-1065.9
NC_002945:1095337:1095529109552910969021374Mycobacterium bovis AF2122/97, complete genomePE-PGRS family protein5e-1065.5
NC_016768:3296478:3312205331220533136231419Mycobacterium tuberculosis KZN 4207 chromosome, complete genomehypothetical protein5e-1065.5
NC_002755:1095105:1095105109510510965351431Mycobacterium tuberculosis CDC1551, complete genomePE_PGRS family protein7e-1065.1
NC_015850:2451957:2460757246075724635372781Acidithiobacillus caldus SM-1 chromosome, complete genomecell surface antigen SLP53e-0963.2
NC_016948:1074034:1092584109258410937741191Mycobacterium intracellulare MOTT-64 chromosome, complete genomehypothetical protein4e-0859.3
NC_016012:1010405:102892110289211029802882Candidatus Arthromitus sp. SFB-rat-Yit, complete genomebeta-propeller fold protein6e-0858.9
NC_009338:5161886:5167293516729351736376345Mycobacterium gilvum PYR-GCK chromosome, complete genomeYVTN beta-propeller repeat-containing protein2e-0756.6
NC_008312:3793760:3799246379924638036914446Trichodesmium erythraeum IMS101, complete genomepeptidase C14, caspase catalytic subunit p209e-0754.7
NC_008312:7099417:7107744710774471122764533Trichodesmium erythraeum IMS101, complete genomeWD-40 repeat1e-0654.3
NC_010943:493002:5142665142665154861221Stenotrophomonas maltophilia K279a, complete genomehypothetical protein5e-0652.4
NC_015947:444466:4577764577764589211146Burkholderia sp. JV3 chromosome, complete genomehypothetical protein5e-0652.4
NC_013730:6933754:6966579696657969677001122Spirosoma linguale DSM 74, complete genome6-phosphogluconolactonase6e-0652
NC_016582:11535695:1154131211541312115440622751Streptomyces bingchenggensis BCW-1 chromosome, complete genomephosphoesterase9e-0651.6