Pre_GI: BLASTP Hits

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Query: NC_010322:29983:29327 Pseudomonas putida GB-1 chromosome, complete genome

Start: 29327, End: 29986, Length: 660

Host Lineage: Pseudomonas putida; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Pseudomonas putida strain GB-1, a fresh water, Gram-negative gamma-proteobacterium, is a genetically tractable, robust manganese (Mn) oxidizer, and as such, is an ideal model for unraveling the catalytic mechanism for, and the molecular regulation of Mn(IV) oxide production and its eventual accumulation on the cell surface at the onset of stationary phase. Since its isolation from Green Bay nearly 20 years ago by Ken Nealson’s group (then at the Center for Great Lakes Studies, Univ. Wisconsin-Milwaukee, USA), it has been the non spore-forming, model organism (along with the closely-related strain MnB1) for molecular genetic studies of Mn(II) oxidization, protein transport and biofilm formation and for biochemical studies on protein purification and Mn(III)-pyoverdine binding. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. As they are metabolically versatile, and well characterized, it makes them great candidates for biocatalysis, bioremediation and other agricultural applications. Certain strains have been used in the production of bioplastics.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009512:27783:285452854529204660Pseudomonas putida F1, complete genomePutative protein-S-isoprenylcysteine methyltransferase-like protein3e-95347
NC_008782:1510000:152359815235981524266669Acidovorax sp. JS42, complete genomeIsoprenylcysteine carboxyl methyltransferase6e-82303
NC_015422:2858228:288298028829802883648669Alicycliphilus denitrificans K601 chromosome, complete genomeIsoprenylcysteine carboxyl methyltransferase1e-81302
NC_008782:2857899:288069528806952881363669Acidovorax sp. JS42, complete genomehypothetical protein3e-80297
NC_018868:619113:630521630521631174654Simiduia agarivorans SA1 = DSM 21679 chromosome, complete genomehypothetical protein1e-57222
NC_008313:2142397:215279021527902153458669Ralstonia eutropha H16 chromosome 1, complete sequencehypothetical protein1e-56219
NC_016147:623666:628195628195628860666Pseudoxanthomonas spadix BD-a59 chromosome, complete genomeisoprenylcysteine carboxyl methyltransferase7e-56216
NC_018697:1343756:136215713621571362819663Cycloclasticus sp. P1 chromosome, complete genomeHypothetical protein4e-55214
NC_016616:1091606:111498011149801115636657Dechlorosoma suillum PS chromosome, complete genomeputative protein-S-isoprenylcysteine methyltransferase1e-54213
NC_008347:174000:208561208561209205645Maricaulis maris MCS10, complete genomeprotein-S-isoprenylcysteine methyltransferase3e-53208
NC_012982:711122:749872749872750513642Hirschia baltica ATCC 49814, complete genomeIsoprenylcysteine carboxyl methyltransferase4e-52204
NC_008146:1577604:158504515850451585791747Mycobacterium sp. MCS, complete genomehypothetical protein1e-45182
NC_008705:1557711:158935315893531590099747Mycobacterium sp. KMS, complete genomeconserved hypothetical protein1e-45182
NC_015580:2444845:246088224608822461394513Novosphingobium sp. PP1Y, complete genomehypothetical protein4e-1684.7
NC_008782:1566172:157115015711501571362213Acidovorax sp. JS42, complete genome1e-1169.7
NC_015064:2421034:244961424496142450183570Acidobacterium sp. MP5ACTX9 chromosome, complete genomeIsoprenylcysteine carboxyl methyltransferase3e-0652