Pre_GI: BLASTP Hits

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Query: NC_010322:1:8209 Pseudomonas putida GB-1 chromosome, complete genome

Start: 8209, End: 8847, Length: 639

Host Lineage: Pseudomonas putida; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Pseudomonas putida strain GB-1, a fresh water, Gram-negative gamma-proteobacterium, is a genetically tractable, robust manganese (Mn) oxidizer, and as such, is an ideal model for unraveling the catalytic mechanism for, and the molecular regulation of Mn(IV) oxide production and its eventual accumulation on the cell surface at the onset of stationary phase. Since its isolation from Green Bay nearly 20 years ago by Ken Nealson’s group (then at the Center for Great Lakes Studies, Univ. Wisconsin-Milwaukee, USA), it has been the non spore-forming, model organism (along with the closely-related strain MnB1) for molecular genetic studies of Mn(II) oxidization, protein transport and biofilm formation and for biochemical studies on protein purification and Mn(III)-pyoverdine binding. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. As they are metabolically versatile, and well characterized, it makes them great candidates for biocatalysis, bioremediation and other agricultural applications. Certain strains have been used in the production of bioplastics.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009512:1:742774278065639Pseudomonas putida F1, complete genomehypothetical protein2e-116417
NC_010501:1:744774478085639Pseudomonas putida W619, complete genomehypothetical protein2e-116417
NC_015572:1:419884198842770783Methylomonas methanica MC09 chromosome, complete genomeTnsA endonuclease1e-1480.1
NC_014539:1:177241772418428705Burkholderia sp. CCGE1003 chromosome 1, complete sequencehypothetical protein7e-1477.4
NC_015572:1:129031290313625723Methylomonas methanica MC09 chromosome, complete genomeTnsA endonuclease1e-1169.7
NC_012968:63898:745097450975189681Methylotenera mobilis JLW8, complete genomehypothetical protein5e-0961.2
NC_007509:3668:250812508125716636Burkholderia sp. 383 chromosome 3, complete sequencehypothetical protein8e-0960.5
NC_007520:407627:427838427838428455618Thiomicrospira crunogena XCL-2, complete genomehypothetical protein4e-0858.2
NC_009659:3384997:339871833987183399434717Janthinobacterium sp. Marseille chromosome, complete genomehypothetical protein8e-0857.4
NC_016901:2594942:261630426163042616936633Shewanella baltica OS678 chromosome, complete genomeTnsA endonuclease6e-0754.3
NC_009997:2635025:265638726563872657019633Shewanella baltica OS195, complete genomeTnsA endonuclease6e-0754.3
NC_013166:32474:353613536136017657Kangiella koreensis DSM 16069, complete genomeTnsA endonuclease1e-0653.1