Pre_GI: BLASTP Hits

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Query: NC_010001:3369500:3383099 Clostridium phytofermentans ISDg, complete genome

Start: 3383099, End: 3384076, Length: 978

Host Lineage: Lachnoclostridium phytofermentans; Lachnoclostridium; Lachnospiraceae; Clostridiales; Firmicutes; Bacteria

General Information: Isolated from forest soil near the Quabbin Reservoir in Massachusetts, USA. This organism plays an important industrial and ecological role in the anaerobic fermentation of cellulose and produces economically significant levels of acetate and ethanol. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015172:775128:782332782332783330999Syntrophobotulus glycolicus DSM 8271 chromosome, complete genomebiotin/acetyl-CoA-carboxylase ligase1e-75283
NC_016052:82358:878958789588854960Tetragenococcus halophilus NBRC 12172, complete genomeputative transcriptional regulator/biotin protein ligase1e-51203
NC_015516:1801500:181219218121921813166975Melissococcus plutonius ATCC 35311, complete genomebiotin-protein ligase/ biotin operon repressor7e-48191
NC_020207:2575808:259161325916132592581969Enterococcus faecium NRRL B-2354, complete genomeBiotin-protein ligase, Biotin operon repressor1e-47190
NC_018664:2459994:248115824811582482144987Clostridium acidurici 9a chromosome, complete genomebifunctional protein biotin operon repressor/biotin--[acetyl-CoA-carboxylase] synthetase BirA6e-47188
NC_016938:336000:340981340981341937957Melissococcus plutonius DAT561 chromosome 1, complete genomebiotin--protein ligase2e-45183
NC_020134:2832857:2855412285541228564221011Clostridium stercorarium subsp. stercorarium DSM 8532, completebifunctional protein biotin operon repressor/biotin--[acetyl-CoA-carboxylase] synthetase BirA1e-41171
NC_015977:3324000:334446233444623345439978Roseburia hominis A2-183 chromosome, complete genomeputative transcriptional repressor of the biotin operon birA6e-41168
NC_009922:490500:500402500402501382981Alkaliphilus oremlandii OhILAs, complete genomebiotin--acetyl-CoA-carboxylase ligase1e-38160
NC_014410:615992:636077636077637057981Thermoanaerobacterium thermosaccharolyticum DSM 571 chromosome,biotin/acetyl-CoA-carboxylase ligase7e-37154
NC_005945:1459357:146985714698571470837981Bacillus anthracis str. Sterne, complete genomebirA bifunctional protein7e-35147
NC_007530:1459412:146990314699031470883981Bacillus anthracis str. 'Ames Ancestor', complete genomebira bifunctional protein7e-35147
NC_009089:4140764:415845141584514159428978Clostridium difficile 630, complete genomeBirA bifunctional protein [includes: biotin operon repressor and biotin--[acetyl-CoA-carboxylase] synthetase1e-34147
NC_013316:4018451:403677340367734037750978Clostridium difficile R20291, complete genomeBirA bifunctional protein [includes: biotin operon repressor and biotin--[acetyl-CoA-carboxylase] synthetase1e-34147
NC_016584:85543:880248802489004981Desulfosporosinus orientis DSM 765 chromosome, complete genomebiotin-(acetyl-CoA-carboxylase) ligase BirA2e-31136
NC_007503:2098980:212529321252932126279987Carboxydothermus hydrogenoformans Z-2901, complete genomeBirA bifunctional protein9e-30130
NC_019903:83857:909179091791897981Desulfitobacterium dichloroeliminans LMG P-21439 chromosome,biotin-(acetyl-CoA-carboxylase) ligase BirA1e-28127
NC_010730:813534:820868820868821824957Sulfurihydrogenibium sp. YO3AOP1, complete genomebiotin/acetyl-CoA-carboxylase ligase5e-28125
NC_007907:225948:231384231384232364981Desulfitobacterium hafniense Y51, complete genomehypothetical protein8e-27121
NC_009515:705911:726156726156727073918Methanobrevibacter smithii ATCC 35061, complete genomebiotin-[acetyl-CoA-carboxylase] ligase/biotin operon regulator bifunctional protein, BirA4e-26119
NC_002516:4747154:478747747874774788415939Pseudomonas aeruginosa PAO1, complete genomebiotin--protein ligase4e-25115
NC_014836:497350:5211065211065221161011Desulfurispirillum indicum S5 chromosome, complete genomebiotin/acetyl-CoA-carboxylase ligase7e-25114
NC_014408:462195:462195462195462980786Methanothermobacter marburgensis str. Marburg chromosome, completebiotin ligase1e-24114
NC_007912:1173752:118056411805641181562999Saccharophagus degradans 2-40, complete genomeBiotin--(acetyl-CoA-carboxylase) ligase7e-24111
NC_010080:1885677:189390018939001894889990Lactobacillus helveticus DPC 4571, complete genomeBiotin--acetyl-CoA-carboxylase ligase2e-23110
NC_011295:1218792:122744012274401228045606Coprothermobacter proteolyticus DSM 5265, complete genomebiotin-[acetyl-CoA-carboxylase] ligase9e-23107
NC_015602:1949610:195919919591991960188990Lactobacillus kefiranofaciens ZW3 chromosome, complete genomebiotin-[acetyl-CoA-carboxylase] ligase and biotin operon repressor1e-22107
NC_018528:1932000:194260919426091943598990Lactobacillus helveticus R0052 chromosome, complete genomebiotin-[acetyl-CoA-carboxylase] ligase and biotin operon repressor1e-22107
NC_011296:1542835:154283515428351543635801Thermodesulfovibrio yellowstonii DSM 11347, complete genomebiotin-[acetyl-CoA-carboxylase] ligase2e-22106
NC_008340:480399:4950814950814960911011Alkalilimnicola ehrlichei MLHE-1, complete genomebiotin--acetyl-CoA-carboxylase ligase2e-21103
NC_014393:4988127:500259050025905003393804Clostridium cellulovorans 743B chromosome, complete genomebiotin/acetyl-CoA-carboxylase ligase3e-2099.8
NC_011184:2723000:272422527242252725184960Vibrio fischeri MJ11 chromosome I, complete sequencebiotin-(acetyl-CoA-carboxylase) ligase4e-2099
NC_015947:280095:283006283006283974969Burkholderia sp. JV3 chromosome, complete genomebiotin/acetyl-CoA-carboxylase ligase6e-2098.2
NC_010376:49185:690506905069778729Finegoldia magna ATCC 29328, complete genomeputative biotin operon repressor2e-1997.1
NC_000917:40111:733967339674295900Archaeoglobus fulgidus DSM 4304, complete genomebiotin operon repressor/biotin--[acetyl CoA carboxylase] ligase (birA)2e-1996.7
NC_011750:4543135:455292745529274553892966Escherichia coli IAI39 chromosome, complete genomebiotin--protein ligase3e-1995.9
NC_007946:3683371:369106336910633692028966Escherichia coli UTI89, complete genomebifunctional biotin--[acetyl-CoA-carboxylase] synthetase/biotin operon repressor4e-1995.9
CU928160:4248621:426222742622274263192966Escherichia coli IAI1 chromosome, complete genomebifunctional biotin-[acetylCoA carboxylase] holoenzyme synthetase and DNA-binding transcriptional repressor, bio-5'-AMP-binding6e-1995.1
NC_011527:953442:976348976348977319972Coxiella burnetii CbuG_Q212, complete genomebiotin operon repressor7e-1994.7
NC_010468:4455201:445828244582824459247966Escherichia coli ATCC 8739, complete genomebifunctional BirA, biotin operon repressor/biotin--acetyl-CoA-carboxylase ligase9e-1994.4
NC_003198:3586000:359255035925503593512963Salmonella enterica subsp. enterica serovar Typhi str. CT18,biotin--protein ligase1e-1894.4
NC_006511:4119332:413132641313264132288963Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCbiotin--protein ligase1e-1894.4
NC_009727:1001203:102432810243281025299972Coxiella burnetii Dugway 7E9-12, complete genomebifunctional protein birA3e-1893.2
NC_011528:767940:790159790159791130972Coxiella burnetii CbuK_Q154, complete genomebiotin operon repressor3e-1893.2
NC_016632:1637500:165877016587701659732963Serratia symbiotica str. 'Cinara cedri' chromosome, completebiotin--protein ligase4e-1892.4
NC_000913:4159090:417110541711054172070966Escherichia coli K12, complete genomebiotin--protein ligase4e-1892
NC_010473:4256000:427080242708024271767966Escherichia coli str. K-12 substr. DH10B, complete genomebifunctional biotin-[acetylCoA carboxylase] holoenzyme synthetase and DNA-binding transcriptional repressor, bio-5'-AMP-binding4e-1892
NC_021150:582011:586093586093587085993Azotobacter vinelandii CA6, complete genomebiotin--protein ligase2e-1790.1
NC_012560:582011:586093586093587085993Azotobacter vinelandii DJ, complete genomeBiotin--acetyl-CoA-carboxylase ligase, bifunctional protein, BirA2e-1790.1
NC_015731:2950874:296098829609882961977990Nitrosomonas sp. Is79A3 chromosome, complete genomebiotin/acetyl-CoA-carboxylase ligase2e-1790.1
NC_020419:923949:928863928863929813951Uncultured Termite group 1 bacterium phylotype Rs-D17 DNA, completebiotin operon repressor/biotin-[acetyl-CoA-carboxylase] ligase2e-1789.7
NS_000191:923949:928863928863929813951Uncultured Termite group 1 bacterium phylotype Rs-D17, completebiotin operon repressor/biotin-[acetyl-CoA-carboxylase] ligase2e-1789.7
NC_007645:6350079:636514663651466366033888Hahella chejuensis KCTC 2396, complete genomeBiotin-(acetyl-CoA carboxylase) ligase1e-1687.8
NC_014297:1282302:130322413032241304147924Halalkalicoccus jeotgali B3 chromosome, complete genomebiotin--[acetyl-CoA-carboxylase] ligase2e-1686.7
NC_007681:1007375:104803210480321048607576Methanosphaera stadtmanae DSM 3091, complete genomepartially conserved hypothetical protein1e-1584.3
NC_014960:2111397:212663521266352127411777Anaerolinea thermophila UNI-1, complete genomebiotin--[acetyl-CoA-carboxylase] ligase3e-1376.3
NC_003413:1521080:155920615592061559943738Pyrococcus furiosus DSM 3638, complete genomebiotin operon repressor/biotin--[acetyl CoA carboxylase] ligase9e-1374.7
NC_008789:942309:947661947661948638978Halorhodospira halophila SL1, complete genomebiotin--acetyl-CoA-carboxylase ligase3e-1272.8
NC_017955:4746441:476219947621994763023825Modestobacter marinus, complete genomebiotin-(Acetyl-CoA-carboxylase) ligase4e-1169.3
NC_014909:219498:224807224807225577771Candidatus Blochmannia vafer str. BVAF chromosome, complete genomebiotin-(acetyl-CoA-carboxylase) synthetase3e-1066.6
NC_005061:214168:218136218136218960825Candidatus Blochmannia floridanus, complete genomebifunctional protein: biotin operon repressor and biotin-[acetyl-CoA carboxylase] synthetase4e-1065.5
NC_007797:914500:930013930013930738726Anaplasma phagocytophilum HZ, complete genomebiotin--acetyl-CoA-carboxylase ligase2e-0963.5
NC_014654:2138794:215858521585852159439855Halanaerobium sp. 'sapolanicus' chromosome, complete genomebiotin/acetyl-CoA-carboxylase ligase3e-0859.7
NC_000868:133451:150138150138150851714Pyrococcus abyssi GE5, complete genomebiotin--protein ligase4e-0859.3
NC_014109:393500:412673412673413329657Candidatus Riesia pediculicola USDA chromosome, complete genomebiotin-[acetyl-CoA-carboxylase] ligase4e-0858.9
NC_013192:107672:127790127790128494705Leptotrichia buccalis DSM 1135, complete genomebiotin/acetyl-CoA-carboxylase ligase8e-0858.2
NC_013407:10953:126701267013395726Methanocaldococcus vulcanius M7, complete genomebiotin/acetyl-CoA-carboxylase ligase1e-0757.8
NC_014774:1019273:102246110224611023219759Candidatus Liberibacter solanacearum CLso-ZC1 chromosome, completebirA bifunctional protein1e-0757.8
NC_016931:773871:786570786570787382813Rickettsia massiliae str. AZT80 chromosome, complete genomebiotin-(acetyl-CoA carboxylase) ligase2e-0653.5
NC_016516:1799521:180208118020811802920840Propionibacterium acnes TypeIA2 P.acn33 chromosome, completebifunctional biotin--[acetyl-CoA-carboxylase] synthetase/biotin operon repressor2e-0653.5
NC_016512:1810625:181062518106251811464840Propionibacterium acnes TypeIA2 P.acn17 chromosome, completebifunctional biotin--[acetyl-CoA-carboxylase] synthetase/biotin operon repressor2e-0653.5
NC_016511:1811171:181117118111711812010840Propionibacterium acnes TypeIA2 P.acn31 chromosome, completebifunctional biotin--[acetyl-CoA-carboxylase] synthetase/biotin operon repressor2e-0653.5
NC_006085:1859191:185919118591911860030840Propionibacterium acnes KPA171202, complete genomeputative BirA bifunctional protein2e-0653.5
NC_014655:1835848:183584818358481836597750Leadbetterella byssophila DSM 17132 chromosome, complete genomebiotin/acetyl-CoA-carboxylase ligase3e-0653.1
NC_015709:1459838:146277014627701463555786Zymomonas mobilis subsp. pomaceae ATCC 29192 chromosome, completebiotin/acetyl-CoA-carboxylase ligase3e-0653.1
NC_015964:1389628:139437213943721395286915Haemophilus parainfluenzae T3T1, complete genomebifunctional biotin-[acetylCoA carboxylase] holoenzyme synthetase/ DNA-binding transcriptional repressor, bio-5'-AMP-binding5e-0652.4