Pre_GI: BLASTP Hits

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Query: NC_009800:2995958:3022339 Escherichia coli HS, complete genome

Start: 3022339, End: 3023286, Length: 948

Host Lineage: Escherichia coli; Escherichia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (HS; serotype O9) is a human commensal that was originally isolated from a laboratory scientist at Walter Reed Army Institute of Research in 1978 (Levine, 1978). Strain HS colonizes the human gastrointestinal tract in challenge experiments, but no overt signs of disease occur. Thus, this strain represents a genomic baseline for human gastrointestinal tract colonization. This organism was named for its discoverer, Theodore Escherich, and is one of the premier model organisms used in the study of bacterial genetics, physiology, and biochemistry. This enteric organism is typically present in the lower intestine of humans, where it is the dominant facultative anaerobe present, but it is only one minor constituent of the complete intestinal microflora. E. coli, is capable of causing various diseases in its host, especially when they acquire virulence traits. E. coli can cause urinary tract infections, neonatal meningitis, and many different intestinal diseases, usually by attaching to the host cell and introducing toxins that disrupt normal cellular processes.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010468:906957:915739915739916686948Escherichia coli ATCC 8739, complete genometype III secretion system apparatus protein YscQ/HrcQ8e-167586
CP002185:3167738:319311031931103194057948Escherichia coli W, complete genome6e-157553
CP002516:903241:912019912019912966948Escherichia coli KO11, complete genome6e-157553
NC_011751:3285646:330988733098873310834948Escherichia coli UMN026 chromosome, complete genomesurface presentation of antigens protein SpaO8e-155546
NC_002695:3702344:372566037256603726646987Escherichia coli O157:H7 str. Sakai, complete genometype III secretion protein4e-149527
NC_002655:3769643:379296537929653793951987Escherichia coli O157:H7 EDL933, complete genometype III secretion protein4e-149527
NC_011353:3805819:383005738300573831043987Escherichia coli O157:H7 str. EC4115 chromosome, complete genome4e-149527
NC_013008:3761467:378478337847833785769987Escherichia coli O157:H7 str. TW14359 chromosome, complete genomesurface presentation of antigens protein SpaO4e-149527
NC_011748:3196173:322012732201273220774648Escherichia coli 55989, complete genome2e-92338
CU928145:3196173:322012732201273220774648Escherichia coli 55989 chromosome, complete genomefragment of Type III secretion apparatus protein (part 2)2e-92338
NC_009801:3175714:319970331997033200275573Escherichia coli E24377A, complete genometype III secretion apparatus protein EpaO27e-92337
NC_013353:3474077:349806834980683498640573Escherichia coli O103:H2 str. 12009, complete genome3e-90332
AP010958:3474077:349806834980683498640573Escherichia coli O103:H2 str. 12009 DNA, complete genome3e-90332
NC_011741:3030324:305431730543173054889573Escherichia coli IAI1 chromosome, complete genome6e-90330
CU928160:3030324:305431730543173054889573Escherichia coli IAI1 chromosome, complete genomefragment of Type III secretion apparatus protein (partial)6e-90330
NC_013364:3552284:357628135762813576853573Escherichia coli O111:H- str. 11128, complete genome3e-89328
NC_011415:3217796:324178732417873242359573Escherichia coli SE11 chromosome, complete genomeputative type III secretion protein1e-88326
NC_013361:3867558:389166038916603892121462Escherichia coli O26:H11 str. 11368 chromosome, complete genome1e-67257
NC_013364:3552284:357686335768633577228366Escherichia coli O111:H- str. 11128, complete genome5e-64244
NC_013361:3867558:389213138921313892496366Escherichia coli O26:H11 str. 11368 chromosome, complete genome5e-64244
CU928145:3196173:322078432207843221149366Escherichia coli 55989 chromosome, complete genomefragment of Type III secretion apparatus protein (part 1)5e-64244
NC_011748:3196173:322078432207843221149366Escherichia coli 55989, complete genome5e-64244
AP010958:3474077:349865034986503499015366Escherichia coli O103:H2 str. 12009 DNA, complete genome3e-57222
NC_013353:3474077:349865034986503499015366Escherichia coli O103:H2 str. 12009, complete genome3e-57222
NC_011094:2913500:294153129415312942442912Salmonella enterica subsp. enterica serovar Schwarzengrund strsurface presentation of antigens protein SpaO3e-30132
NC_012125:2938519:296824629682462969145900Salmonella enterica subsp. enterica serovar Paratyphi C strainsurface presentation of antigens protein SpaO4e-30132
NC_006905:2987863:298786329878632988774912Salmonella enterica subsp. enterica serovar Choleraesuis strtype III secretion protein4e-30132
NC_017046:3027161:305565130556513056550900Salmonella enterica subsp. enterica serovar Typhimurium str. 798surface presentation of antigens protein (associated with type III secretion and virulence)8e-30131
NC_011080:2982346:301083930108393011750912Salmonella enterica subsp. enterica serovar Newport str. SL254,type III secretion apparatus protein, YscQ/HrcQ family7e-30131
NC_011205:3078732:307873230787323079643912Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853surface presentation of antigens protein SpaO7e-30131
NC_011274:2909799:290979929097992910710912Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91surface presentation of antigens protein SpaO7e-30131
NC_006511:2819128:284887128488712849782912Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCtype III secretion protein7e-30131
NC_011147:2814664:284440728444072845318912Salmonella enterica subsp. enterica serovar Paratyphi A strsurface presentation of antigens protein SpaO7e-30131
NC_016831:2867766:289625928962592897170912Salmonella enterica subsp. enterica serovar Gallinarum/pullorumsurface presentation of antigens protein (associated with type III secretion and virulence)5e-30131
NC_010102:2967464:299731729973172998228912Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein1e-29130
NC_003197:3005842:303433530343353035246912Salmonella typhimurium LT2, complete genometype III secretion protein9e-30130
NC_016810:3028421:305691130569113057822912Salmonella enterica subsp. enterica serovar Typhimurium strsurface presentation of antigens protein (associated with type III secretion and virulence)9e-30130
NC_016856:3026426:305457230545723055483912Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Ssurface presentation of antigens protein SpaO9e-30130
NC_016857:3028421:305691130569113057822912Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74surface presentation of antigens protein SpaO9e-30130
NC_016860:3029272:305776530577653058676912Salmonella enterica subsp. enterica serovar Typhimurium strsurface presentation of antigens protein SpaO9e-30130
NC_016863:2974333:300282530028253003736912Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1surface presentation of antigens protein SpaO9e-30130
NC_011149:2912219:294286129428612943772912Salmonella enterica subsp. enterica serovar Agona str. SL483,type III secretion apparatus protein, YscQ/HrcQ family4e-29129
NC_016832:2859491:285949128594912860402912Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,Surface presentation of antigens protein SpaO4e-29128
NC_003198:2856596:288633528863352887246912Salmonella enterica subsp. enterica serovar Typhi str. CT18,type III secretion protein4e-29128
NC_004631:2872192:287219228721922873103912Salmonella enterica subsp. enterica serovar Typhi Ty2, completetype III secretion protein4e-29128
NC_010694:2971170:299255029925502993476927Erwinia tasmaniensis, complete genomeType III secretion apparatus1e-1170.9
NC_013961:851044:871689871689872615927Erwinia amylovora, complete genomeSurface presentation of antigens protein spaO6e-1168.6
NC_013971:2876733:289868528986852899611927Erwinia amylovora ATCC 49946 chromosome, complete genometype III secretion system protein6e-1168.6
NC_010694:2138000:215608621560862157015930Erwinia tasmaniensis, complete genomeType III secretion apparatus3e-0962.8
NC_013971:1660144:168423716842371685160924Erwinia amylovora ATCC 49946 chromosome, complete genometype III secretion system protein4e-0859.3
NC_013961:1622616:164670916467091647632924Erwinia amylovora, complete genomeSurface presentation of antigens protein SpaO4e-0859.3
NC_012658:2930244:2945156294515629463161161Clostridium botulinum Ba4 str. 657 chromosome, complete genomeflagellar motor switch protein3e-0756.2
NC_012563:3090954:3107671310767131088311161Clostridium botulinum A2 str. Kyoto, complete genomeflagellar motor switch protein FliN3e-0756.2
NC_009495:2876865:2893582289358228947421161Clostridium botulinum A str. ATCC 3502 chromosome, complete genomeflagellar motor switch protein3e-0756.2
NC_009697:2790277:2806994280699428081541161Clostridium botulinum A str. ATCC 19397 chromosome, completeflagellar motor switch protein3e-0756.2
NC_009698:2727203:2743920274392027450801161Clostridium botulinum A str. Hall chromosome, complete genomeflagellar motor switch protein3e-0756.2
NC_010520:2937981:2953084295308429542441161Clostridium botulinum A3 str. Loch Maree, complete genomeflagellar motor switch protein FliN3e-0756.2
NC_009699:2901497:2917261291726129184211161Clostridium botulinum F str. Langeland chromosome, complete genomeflagellar motor switch protein3e-0756.2
NC_017297:2905138:2917398291739829185581161Clostridium botulinum F str. 230613 chromosome, complete genomeflagellar motor switch protein FliN3e-0756.2
NC_010516:2900057:2912728291272829138881161Clostridium botulinum B1 str. Okra, complete genomeflagellar motor switch protein FliN3e-0756.2
NC_012214:2221702:224349122434912244417927Erwinia pyrifoliae Ep1/96, complete genomeType III secretion apparatus7e-0755.1
NC_008593:1060548:1080379108037910815691191Clostridium novyi NT, complete genomeflagellar switch protein FliY, contains CheC-like domain7e-0755.1
NC_021182:2921000:2936970293697029381181149Clostridium pasteurianum BC1, complete genomeflagellar motor switch protein FliN4e-0652.4