Pre_GI: BLASTP Hits

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Query: NC_009800:2651730:2661400 Escherichia coli HS, complete genome

Start: 2661400, End: 2662044, Length: 645

Host Lineage: Escherichia coli; Escherichia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (HS; serotype O9) is a human commensal that was originally isolated from a laboratory scientist at Walter Reed Army Institute of Research in 1978 (Levine, 1978). Strain HS colonizes the human gastrointestinal tract in challenge experiments, but no overt signs of disease occur. Thus, this strain represents a genomic baseline for human gastrointestinal tract colonization. This organism was named for its discoverer, Theodore Escherich, and is one of the premier model organisms used in the study of bacterial genetics, physiology, and biochemistry. This enteric organism is typically present in the lower intestine of humans, where it is the dominant facultative anaerobe present, but it is only one minor constituent of the complete intestinal microflora. E. coli, is capable of causing various diseases in its host, especially when they acquire virulence traits. E. coli can cause urinary tract infections, neonatal meningitis, and many different intestinal diseases, usually by attaching to the host cell and introducing toxins that disrupt normal cellular processes.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_020063:3690308:372878737287873729140354Enterobacteriaceae bacterium strain FGI 57, complete genomehypothetical protein3e-45181
NC_006350:3865584:388210838821083882494387Burkholderia pseudomallei K96243 chromosome 1, complete sequenceputative plasmid conjugal transfer protein4e-21101
NC_016745:2028424:204229020422902042664375Oceanimonas sp. GK1 chromosome, complete genomeconjugal transfer relaxosome component TraJ3e-2098.6
NC_008463:1293079:131265513126551313026372Pseudomonas aeruginosa UCBPP-PA14, complete genomeoriT-binding protein, TraJ4e-1994.7
NC_011000:183928:193882193882194244363Burkholderia cenocepacia J2315 chromosome 1, complete sequenceconjugal transfer relaxosome component TraJ1e-1583.2