Pre_GI: BLASTP Hits

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Query: NC_009727:766000:768535 Coxiella burnetii Dugway 7E9-12, complete genome

Start: 768535, End: 769980, Length: 1446

Host Lineage: Coxiella burnetii; Coxiella; Coxiellaceae; Legionellales; Proteobacteria; Bacteria

General Information: Coxiella burnetii Dugway 5J108-111 was isolated from rodents in Utah, USA. This organism is widely distributed in nature and can cause infections in reptiles, birds, and mammals. It causes Q fever, or 'query' fever, an atypical pneumonia first associated with abattoir workers in Australia. Transmission may be through insect vectors such as ticks that have bitten an infected wild or domesticated animal, or through an aerosol produced by domesticated animals such as sheep or cattle. The presence of a plasmid is believed to be associated with virulence and pathogenicity, however C. burnetii isolates containing plasmid QpDG are avirulent in guinea pigs and plasmidless isolates have been associated with endocarditis in humans. Coxiella burnetii has a developmental life cycle, and can grow vegetatively through binary fission, or asymmetrically and produce a spore-like cell. The spore-like cell may enable the organism to exist extracellularly for small amounts of time. This bacterium is an obligate intracellular pathogen. It is endocytosed by a host cell, a macrophage for example, and lives and replicates inside the phagolysozome, a unique property of this organism. The genome encodes proteins that have a higher than average pI, which may enable adaptation to the acidic environment of the phagolysozome. The chromosome also contains genes for a number of detoxification and stress response proteins such as dismutases that allow growth in the oxidative environment. The type IV system is similar to the one found in Legionella, which may be important for intracellular survival. This organism produces numerous ankyrin-repeat proteins that may be involved in interactions with the host cell. The genome has 83 pseudogenes, which may be a result of the typical genome-wide degradation observed with other intracellular organisms and also has a group I intron in the 23S ribosomal RNA gene.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013093:737737:7563567563567578371482Actinosynnema mirum DSM 43827, complete genomepeptidase S10 serine carboxypeptidase1e-41171
NC_009142:949510:9507639507639522411479Saccharopolyspora erythraea NRRL 2338, complete genomepeptidase S10, serine carboxypeptidase4e-41169
NC_018145:50237:6625066250678601611Zymomonas mobilis subsp. mobilis ATCC 29191 chromosome, completepeptidase S10 serine carboxypeptidase4e-40166
NC_006526:1303635:1303635130363513052451611Zymomonas mobilis subsp. mobilis ZM4, complete genomecarboxypeptidase-related protein6e-40165
NC_020541:2850831:2853606285360628551111506Rhodanobacter sp. 2APBS1, complete genomecarboxypeptidase C (cathepsin A)3e-36153
NC_009079:1492664:1499449149944915011761728Burkholderia mallei NCTC 10247 chromosome I, complete sequenceserine-type carboxypeptidase family protein2e-29130
NC_009078:862796:8700248700248717511728Burkholderia pseudomallei 1106a chromosome II, complete sequenceserine carboxypeptidase family protein2e-29130
NC_009075:937782:9450109450109467371728Burkholderia pseudomallei 668 chromosome II, complete sequenceserine carboxypeptidase family protein2e-29130
NC_006351:881655:8889518889518906151665Burkholderia pseudomallei K96243 chromosome 2, complete sequencehypothetical protein2e-29130
NC_007435:2701242:2708460270846027102171758Burkholderia pseudomallei 1710b chromosome II, complete sequenceserine-type carboxypeptidase family protein1e-29130
NC_007511:3103999:3126013312601331278571845Burkholderia sp. 383 chromosome 2, complete sequencePeptidase S10, serine carboxypeptidase5e-2099.4
NC_009483:1116385:1124728112472811283093582Geobacter uraniireducens Rf4 chromosome, complete genomepeptidase S10, serine carboxypeptidase4e-0653.5