Pre_GI: BLASTP Hits

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Query: NC_009664:4423829:4675218 Kineococcus radiotolerans SRS30216, complete genome

Start: 4675218, End: 4675811, Length: 594

Host Lineage: Kineococcus radiotolerans; Kineococcus; Kineosporiaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: This organism is a coccoid bacterium originally isolated from a high-level radioactive waste cell at the Savannah River Site in Aiken, South Carolina, USA, in 2002. Radiation-resistant bacterium. Similarly to Deinococcus radiodurans, K. radiotolerans exhibits a high degree of resistance to ionizing gamma-radiation. Cells are also highly resistant to dessication. Kineococcus-like 16S rRNA gene sequences have been reported from the Mojave desert and other arid environments where these bacteria seem to be ubiquitous. Because of its high resistance to ionizing radiation and desiccation, K. radiotolerans has potential use in applications involving in situ biodegradation of problematic organic contaminants from highly radioactive environments. Moreover, comparative functional genomic characterization of this species and other known radiotolerant bacteria such as Deinococcus radiodurans and Rubrobacter xylanophilus will shed light onto the strategies these bacteria use for survival in high radiation environments, as well as the evolutionary origins of radioresistance and their highly efficient DNA repair machinery. This organism produces an orange carotenoid-like pigment. Cell growth occurs between 11-41 degresss C, pH 5-9, and in the presence of <5% NaCl and <20% glucose. Carbohydrates and alcohols are primary growth substrates.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_002944:1881405:188362818836281884293666Mycobacterium avium subsp. paratuberculosis K-10, complete genomehypothetical protein1e-30132
NC_021150:3200959:320621432062143206816603Azotobacter vinelandii CA6, complete genomeNADP oxidoreductase, coenzyme F420-dependent protein6e-30130
NC_012560:3200961:320621632062163206818603Azotobacter vinelandii DJ, complete genomeNADP oxidoreductase, coenzyme F420-dependent protein6e-30130
NC_008313:2685531:269246926924692693086618Ralstonia eutropha H16 chromosome 1, complete sequenceNADP oxidoreductase coenzyme F420-dependent6e-30130
NC_012587:2298324:231746023174602318059600Rhizobium sp. NGR234, complete genomehypothetical protein2e-27121
NC_012912:1053618:108817110881711088818648Dickeya zeae Ech1591, complete genomeNADP oxidoreductase coenzyme F420-dependent9e-22103
NC_009664:4696961:469696146969614697566606Kineococcus radiotolerans SRS30216, complete genomeNADP oxidoreductase coenzyme F420-dependent2e-21101
NC_015953:46732:648826488265484603Streptomyces sp. SirexAA-E chromosome, complete genomeNADP oxidoreductase coenzyme F420-dependent2e-1892
NC_013730:4573077:457561545756154576226612Spirosoma linguale DSM 74, complete genomeNADP oxidoreductase coenzyme F420-dependent1e-1686.3
NC_015379:4630367:464713646471364647729594Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,Putative oxidoreductase3e-1478.2
NC_014923:1249267:125412812541281254727600Mesorhizobium ciceri biovar biserrulae WSM1271 chromosome, completeNADP oxidoreductase coenzyme F420-dependent1e-1273.2
NC_009921:4186000:419360741936074194275669Frankia sp. EAN1pec, complete genomeNADP oxidoreductase coenzyme F420-dependent1e-0859.7
NC_012560:3200961:320695832069583207620663Azotobacter vinelandii DJ, complete genomeNADP oxidoreductase coenzyme F420-dependent family protein4e-0754.7
NC_021150:3200959:320695632069563207618663Azotobacter vinelandii CA6, complete genomeNADP oxidoreductase coenzyme F420-dependent family protein4e-0754.7
NC_009664:4423829:442552744255274426396870Kineococcus radiotolerans SRS30216, complete genomeNADP oxidoreductase coenzyme F420-dependent7e-0753.5
NC_009664:4423829:468102846810284681675648Kineococcus radiotolerans SRS30216, complete genomeNADP oxidoreductase coenzyme F420-dependent1e-0652.8
NC_014973:54449:598695986960567699Geobacter sp. M18 chromosome, complete genomeNADP oxidoreductase coenzyme F420-dependent3e-0652