Pre_GI: BLASTP Hits

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Query: NC_009439:860571:878735 Pseudomonas mendocina ymp, complete genome

Start: 878735, End: 879286, Length: 552

Host Lineage: Pseudomonas mendocina; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Soil and subsurface bacterium. Strain ymp was isolated as part of the Yucca Mountain Project from sediment in a surface holding pond of a drilling operation at the Nevada Test Site, NV, USA (the proposed site of the high-level nuclear repository). Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. Pseudomonas mendocina is a pentachlorophenol (PCP)-degrading bacterium was isolated from PCP-contaminated soil. It is able to act as a bioremediation agent without the accumulation of inhibitory toxic compounds.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015410:969526:986337986337986888552Pseudomonas mendocina NK-01 chromosome, complete genomeN-acetyl-anhydromuranmyl-L-alanine amidase1e-93341
NC_020829:1068438:108490810849081085471564Pseudomonas denitrificans ATCC 13867, complete genomeN-acetyl-anhydromuranmyl-L-alanine amidase4e-75280
NC_018080:5070687:507373150737315074297567Pseudomonas aeruginosa DK2 chromosome, complete genomeN-acetyl-anhydromuranmyl-L-alanine amidase3e-72270
NC_018868:3943088:396230739623073962897591Simiduia agarivorans SA1 = DSM 21679 chromosome, complete genomeN-acetyl-anhydromuranmyl-L-alanine amidase2e-57221
NC_009665:4675289:468353546835354684098564Shewanella baltica OS185 chromosome, complete genomeN-acetyl-anhydromuranmyl-L-alanine amidase3e-57220
NC_011663:4579777:458443845844384585001564Shewanella baltica OS223 chromosome, complete genomeN-acetyl-anhydromuranmyl-L-alanine amidase1e-56219
NC_007912:1111093:113516711351671135766600Saccharophagus degradans 2-40, complete genomeProlyl-tRNA synthetase2e-55214
NC_010694:891967:896775896775897350576Erwinia tasmaniensis, complete genomeN-acetylmuramyl L-alanine amydase2e-54211
NC_007347:3204637:322724332272433227854612Ralstonia eutropha JMP134 chromosome 1, complete sequenceN-acetylmuramoyl-L-alanine amidase, family 23e-54211
NC_012214:897206:902048902048902617570Erwinia pyrifoliae Ep1/96, complete genomeN-acetylmuramyl L-alanine amydase4e-54210
NC_008321:458811:472477472477473016540Shewanella sp. MR-4, complete genomeN-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD2e-53208
NC_013971:817284:821377821377821946570Erwinia amylovora ATCC 49946 chromosome, complete genomeN-acetylmuramyl l-alanine amydase3e-53207
NC_013961:2932348:294943629494362950005570Erwinia amylovora, complete genomeProtein ampD3e-53207
NC_021066:3201500:320667332066733207236564Raoultella ornithinolytica B6, complete genomeN-acetyl-anhydromuranmyl-L-alanine amidase1e-52206
NC_010645:406794:450383450383450994612Bordetella avium 197N, complete genomeN-acetyl-anhydromuranmyl-L-alanine amidase8e-51199
NC_011901:625712:664744664744665313570Thioalkalivibrio sulfidophilus HL-EbGr7 chromosome, completeN-acetyl-anhydromuranmyl-L-alanine amidase3e-49194
NC_008344:554229:557692557692558237546Nitrosomonas eutropha C91, complete genomeN-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD2e-48191
NC_002927:506183:533836533836534417582Bordetella bronchiseptica RB50, complete genomeN-acetylmuramoyl-L-alanine amidase5e-48190
NC_002928:507749:532483532483533064582Bordetella parapertussis 12822, complete genomeN-acetylmuramoyl-L-alanine amidase6e-48190
NC_002929:52500:743587435874939582Bordetella pertussis Tohama I, complete genomeN-acetylmuramoyl-L-alanine amidase6e-48189
NC_017223:51180:743587435874939582Bordetella pertussis CS chromosome, complete genomeN-acetyl-anhydromuranmyl-L-alanine amidase6e-48189
NC_013959:2666321:267620226762022676738537Sideroxydans lithotrophicus ES-1 chromosome, complete genomeN-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD5e-47187
NC_015850:2451957:245308224530822453636555Acidithiobacillus caldus SM-1 chromosome, complete genomeN-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD4e-45180
NC_011662:1160887:118389311838931184420528Thauera sp. MZ1T, complete genomeN-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD5e-43173
NC_016616:134449:135991135991136563573Dechlorosoma suillum PS chromosome, complete genomenegative regulator of beta-lactamase expression7e-43173
NC_012779:3316877:332413933241393324909771Edwardsiella ictaluri 93-146, complete genomeN-acetylmuramoyl-L-alanine amidase AmiD1e-1685.9
NC_010067:892729:912875912875913576702Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein1e-1685.9
NC_013508:3188978:321210932121093212879771Edwardsiella tarda EIB202, complete genomeprobable N-acetylmuramoyl-L-alanine amidase2e-1685.5
NC_014932:1232346:126256212625621263332771Bartonella clarridgeiae 73, complete genomeN-acetylmuramoyl-L-alanine amidase amiD precursor4e-1684.3
NC_012779:2127542:213393121339312134815885Edwardsiella ictaluri 93-146, complete genomeN-acetylmuramoyl-L-alanine amidase AmiD6e-1580.1
NC_014532:1481787:150366215036621504546885Halomonas elongata DSM 2581, complete genomeN-acetylmuramoyl-L-alanine amidase domain protein2e-1478.6
NC_013517:2633574:265363326536332654463831Sebaldella termitidis ATCC 33386, complete genomeN-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD6e-1477
NC_013956:1994970:200984520098452010738894Pantoea ananatis LMG 20103 chromosome, complete genomeYbjR1e-1375.9
NC_016816:2508204:251215125121512513044894Pantoea ananatis LMG 5342, complete genomeN-acetylmuramoyl-L-alanine amidase AmiD2e-1375.9
NC_013971:1927510:194581519458151946684870Erwinia amylovora ATCC 49946 chromosome, complete genomeN-acetylmuramoyl-L-alanine amidase2e-1375.5
NC_013961:1891000:190828819082881909157870Erwinia amylovora, complete genomeprobable N-acetylmuramoyl-L-alanine amidase2e-1375.5
NC_019907:845663:849699849699850544846Liberibacter crescens BT-1 chromosome, complete genomeN-acetylmuramoyl-L-alanine amidase2e-1375.1
NC_002929:2589202:258920225892022590029828Bordetella pertussis Tohama I, complete genomeputative exported hydrolase4e-1167.8
NC_013595:3712257:3725059372505937265011443Streptosporangium roseum DSM 43021, complete genomeNegative regulator of beta-lactamase expression- like protein4e-0961.2
NC_016609:6177651:6199294619929462021672874Niastella koreensis GR20-10 chromosome, complete genomeN-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD6e-0960.5
NC_005955:1166521:116652111665211167480960Bartonella quintana str. Toulouse, complete genomehypothetical protein7e-0650.4