Pre_GI: BLASTP Hits

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Query: NC_009439:637193:654334 Pseudomonas mendocina ymp, complete genome

Start: 654334, End: 655230, Length: 897

Host Lineage: Pseudomonas mendocina; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Soil and subsurface bacterium. Strain ymp was isolated as part of the Yucca Mountain Project from sediment in a surface holding pond of a drilling operation at the Nevada Test Site, NV, USA (the proposed site of the high-level nuclear repository). Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. Pseudomonas mendocina is a pentachlorophenol (PCP)-degrading bacterium was isolated from PCP-contaminated soil. It is able to act as a bioremediation agent without the accumulation of inhibitory toxic compounds.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015410:709947:722476722476723372897Pseudomonas mendocina NK-01 chromosome, complete genomeMig-14 family protein3e-150531
NC_015556:4543380:454817745481774549073897Pseudomonas fulva 12-X chromosome, complete genomeMig-14 family protein6e-149526
NC_009434:4140362:414177941417794142675897Pseudomonas stutzeri A1501, complete genomehypothetical protein1e-113409
NC_010694:1052722:107042910704291071346918Erwinia tasmaniensis, complete genomePredicted Mig-14 family protein4e-43175
NC_014618:2788533:279162527916252792515891Enterobacter cloacae SCF1 chromosome, complete genomeMig-14 family protein1e-25117
NC_013283:113660:764176418504864Cronobacter turicensis plasmid pCTU1, complete sequencehypothetical protein2e-24113
NC_010067:1829041:184092518409251841842918Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein6e-22105
NC_011094:2791719:283672228367222837618897Salmonella enterica subsp. enterica serovar Schwarzengrund strhypothetical protein3e-21102
NC_011149:2829811:283805728380572838953897Salmonella enterica subsp. enterica serovar Agona str. SL483,Mig-142e-21102
NC_011083:2847318:290410629041062905002897Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,Mig-148e-21101
NC_011205:2962270:297428929742892975185897Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853Mig-147e-21101
NC_011274:2793355:280537528053752806271897Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91transcriptional regulator7e-21101
NC_011294:2802502:281452228145222815418897Salmonella enterica subsp. enterica serovar Enteritidis strtranscriptional regulator7e-21101
NC_016831:2779864:279188527918852792781897Salmonella enterica subsp. enterica serovar Gallinarum/pullorumputative transcriptional regulator7e-21101
NC_003197:2894344:292959529295952930491897Salmonella typhimurium LT2, complete genomeputative transcriptional activator6e-21101
NC_016810:2943912:295217129521712953067897Salmonella enterica subsp. enterica serovar Typhimurium strputative transcriptional regulator6e-21101
NC_016856:2896630:294983029498302950726897Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sputative transcriptional activator6e-21101
NC_016857:2943912:295217129521712953067897Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74putative transcriptional activator6e-21101
NC_016860:2917910:295316129531612954057897Salmonella enterica subsp. enterica serovar Typhimurium strputative transcriptional activator6e-21101
NC_012125:2826624:286481128648112865707897Salmonella enterica subsp. enterica serovar Paratyphi C straintranscriptional regulator5e-21101
NC_016832:2743801:275581427558142756710897Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,hypothetical protein5e-21101
NC_004631:2755306:276851527685152769411897Salmonella enterica subsp. enterica serovar Typhi Ty2, completeputative transcriptional regulator5e-21101
NC_003198:2769449:278265827826582783554897Salmonella enterica subsp. enterica serovar Typhi str. CT18,putative transcriptional regulator5e-21101
NC_010067:171053:178098178098178994897Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein5e-21101
NC_017046:2943929:295091129509112951807897Salmonella enterica subsp. enterica serovar Typhimurium str. 798transcriptional regulator6e-21101
NC_016863:2844883:289808328980832898979897Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative transcriptional activator6e-21101
NC_010102:2881714:289373728937372894633897Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein1e-20100
NC_011080:2897977:290623529062352907131897Salmonella enterica subsp. enterica serovar Newport str. SL254,Mig-141e-20100
NC_009837:155284:161865161865162773909Escherichia coli APEC O1 plasmid pAPEC-O1-ColBM, complete sequencehypothetical protein2e-1789.7
NC_010488:48868:717637176372671909Escherichia coli SMS-3-5 plasmid pSMS35_130, complete sequenceMig-14 family protein2e-1789.7
NC_011747:115864:132394132394133302909Escherichia coli S88 plasmid pECOS88, complete sequenceconserved hypothetical protein; putative Mig-14 protein3e-1789.4
NC_006905:2857699:288437828843782885175798Salmonella enterica subsp. enterica serovar Choleraesuis strputative transcription activator3e-1685.9