Pre_GI: BLASTP Hits

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Query: NC_009439:4913767:4934341 Pseudomonas mendocina ymp, complete genome

Start: 4934341, End: 4935387, Length: 1047

Host Lineage: Pseudomonas mendocina; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Soil and subsurface bacterium. Strain ymp was isolated as part of the Yucca Mountain Project from sediment in a surface holding pond of a drilling operation at the Nevada Test Site, NV, USA (the proposed site of the high-level nuclear repository). Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. Pseudomonas mendocina is a pentachlorophenol (PCP)-degrading bacterium was isolated from PCP-contaminated soil. It is able to act as a bioremediation agent without the accumulation of inhibitory toxic compounds.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_008260:2142311:2161135216113521621991065Alcanivorax borkumensis SK2, complete genomesulfonate ABC transporter periplasmic-binding protein2e-76286
NC_017192:1841987:1870147187014718712231077Arcobacter sp. L, complete genomeABC transporter substrate binding component5e-74278
NC_015559:3645181:3650535365053536515871053Marinomonas posidonica IVIA-Po-181 chromosome, complete genomeABC transporter periplasmic binding protein, urea carboxylase region4e-73275
NC_014121:2247913:2249519224951922505771059Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completeputative ABC transporter, periplasmic protein1e-68260
NC_007958:2423335:2437866243786624389361071Rhodopseudomonas palustris BisB5, complete genomeputative taurine transport system protein1e-68260
NC_013956:4490000:4512651451265145137091059Pantoea ananatis LMG 20103 chromosome, complete genomehypothetical protein3e-52206
NC_015565:1163148:1171741117174111727751035Desulfotomaculum carboxydivorans CO-1-SRB chromosome, completealiphatic sulfonates family ABC transporter periplasmic ligand-binding protein5e-24112
NC_015589:870804:8831768831768841981023Desulfotomaculum ruminis DSM 2154 chromosome, complete genomefamily 3 extracellular solute-binding protein3e-23109
NC_015565:1163148:1165148116514811661881041Desulfotomaculum carboxydivorans CO-1-SRB chromosome, completealiphatic sulfonates family ABC transporter periplasmic ligand-binding protein1e-20100
NC_013894:672840:680907680907681881975Thermocrinis albus DSM 14484 chromosome, complete genomealiphatic sulfonates family ABC transporter, periplasmic ligand-binding protein6e-2098.6
NC_007644:469181:4691814691814702241044Moorella thermoacetica ATCC 39073, complete genomeABC transporter, substrate-binding protein, aliphatic sulphonates2e-1790.1
NC_015172:951550:9572569572569583621107Syntrophobotulus glycolicus DSM 8271 chromosome, complete genomealiphatic sulfonates family ABC transporter, periplasmic ligand-binding protein2e-1480.5
NC_008062:81338:8364783647846691023Burkholderia cenocepacia AU 1054 chromosome 3, complete sequenceABC transport system substrate-binding protein9e-1478.2
NC_008544:55451:6146661466624881023Burkholderia cenocepacia HI2424 chromosome 3, complete sequenceABC transport system substrate-binding protein9e-1478.2
NC_015565:1163148:1169787116978711707941008Desulfotomaculum carboxydivorans CO-1-SRB chromosome, completealiphatic sulfonates family ABC transporter periplasmic ligand-binding protein4e-1375.9
NC_015275:521436:5325635325635336241062Clostridium lentocellum DSM 5427 chromosome, complete genomealiphatic sulfonates family ABC transporter, periplasmic ligand-binding protein1e-1067.8
NC_013959:83992:964969649697494999Sideroxydans lithotrophicus ES-1 chromosome, complete genomeNMT1/THI5 like domain protein2e-0860.5
NC_009439:4734237:474938547493854750377993Pseudomonas mendocina ymp, complete genomealiphatic sulfonate ABC transporter periplasmic ligand-binding protein8e-0858.5
NC_016745:2161408:218332221833222184272951Oceanimonas sp. GK1 chromosome, complete genomesubstrate-binding protein involved in nitrate/sulfonate/bicarbonate ABC transporter1e-0654.3
NC_008319:1376938:139854213985421399513972Synechococcus sp. CC9311, complete genomelipoprotein, putative5e-0652.4