Pre_GI: BLASTP Hits

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Query: NC_009439:4913767:4933328 Pseudomonas mendocina ymp, complete genome

Start: 4933328, End: 4934239, Length: 912

Host Lineage: Pseudomonas mendocina; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Soil and subsurface bacterium. Strain ymp was isolated as part of the Yucca Mountain Project from sediment in a surface holding pond of a drilling operation at the Nevada Test Site, NV, USA (the proposed site of the high-level nuclear repository). Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. Pseudomonas mendocina is a pentachlorophenol (PCP)-degrading bacterium was isolated from PCP-contaminated soil. It is able to act as a bioremediation agent without the accumulation of inhibitory toxic compounds.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_007348:2519447:253399225339922534888897Ralstonia eutropha JMP134 chromosome 2, complete sequenceregulatory protein, LysR:LysR, substrate-binding8e-38157
NC_008700:1994829:199482919948291995719891Shewanella amazonensis SB2B, complete genometranscriptional regulator, LysR family2e-35149
NC_010676:2621496:262535126253512626265915Burkholderia phytofirmans PsJN chromosome 2, complete sequencetranscriptional regulator, LysR family3e-34145
NC_015276:2948923:296983129698312970733903Marinomonas mediterranea MMB-1 chromosome, complete genometranscriptional regulator, LysR family9e-32137
NC_015556:819503:822306822306823226921Pseudomonas fulva 12-X chromosome, complete genometranscriptional regulator, LysR family5e-31135
NC_009832:3500000:351210535121053512998894Serratia proteamaculans 568, complete genometranscriptional regulator, LysR family8e-31134
NC_016612:28451:606586065861569912Klebsiella oxytoca KCTC 1686 chromosome, complete genomeLysR family transcriptional regulator3e-29129
NC_004129:3965947:397820039782003979129930Pseudomonas fluorescens Pf-5, complete genometranscriptional regulator, LysR family2e-28126
NC_002516:1236644:123664412366441237546903Pseudomonas aeruginosa PAO1, complete genomeprobable transcriptional regulator7e-28124
NC_008463:4389721:441238644123864413288903Pseudomonas aeruginosa UCBPP-PA14, complete genomeprobable transcriptional regulator7e-28124
NC_018080:4280401:430315243031524304054903Pseudomonas aeruginosa DK2 chromosome, complete genometranscriptional regulator7e-28124
NC_003910:4234000:426365242636524264587936Colwellia psychrerythraea 34H, complete genomesubstrate binding transcriptional regulator, LysR family4e-27122
NC_010682:2642269:265943626594362660344909Ralstonia pickettii 12J chromosome 1, complete sequencetranscriptional regulator, LysR family1e-26120
NC_005085:1498000:151770015177001518614915Chromobacterium violaceum ATCC 12472, complete genomeprobable transcriptional regulator8e-26117
NC_016002:1048420:105613310561331057047915Pseudogulbenkiania sp. NH8B, complete genomeLysR family transcriptional regulator2e-22106
NC_016027:1902854:193643219364321937358927Gluconacetobacter xylinus NBRC 3288, complete genomeLysR family transcriptional regulator4e-1788.6
NC_007347:1215358:122528012252801226188909Ralstonia eutropha JMP134 chromosome 1, complete sequenceregulatory protein, LysR:LysR, substrate-binding3e-1272.4
NC_012917:4646491:464962746496274650535909Pectobacterium carotovorum subsp. carotovorum PC1, complete genometranscriptional regulator, LysR family1e-0963.9
NC_004547:138500:151645151645152553909Erwinia carotovora subsp. atroseptica SCRI1043, complete genomeLysR-family transcriptional regulator1e-0963.9
NC_014500:4691915:469585346958534696839987Dickeya dadantii 3937 chromosome, complete genomeLysR-family transcriptional regulator5e-0962
NC_016002:2037374:207456120745612075484924Pseudogulbenkiania sp. NH8B, complete genomeLysR family transcriptional regulator3e-0859.3
NC_013406:5954472:596391159639115964849939Paenibacillus sp. Y412MC10 chromosome, complete genomeLysR family transcriptional regulator4e-0858.9
NC_002516:2306776:232633423263342327287954Pseudomonas aeruginosa PAO1, complete genomeprobable transcriptional regulator4e-0858.9
NC_012880:135508:151594151594152502909Dickeya dadantii Ech703, complete genometranscriptional regulator, LysR family4e-0858.9
NC_015733:2720183:272333027233302724307978Pseudomonas putida S16 chromosome, complete genomeLysR family transcriptional regulator3e-0756.2
NC_009656:4527457:456140945614094562344936Pseudomonas aeruginosa PA7 chromosome, complete genomeLysR family transcriptional regulator4e-0755.8
NC_011000:1262324:128948912894891290394906Burkholderia cenocepacia J2315 chromosome 1, complete sequenceLysR family regulatory protein6e-0755.1
NC_010557:207846:215435215435216322888Burkholderia ambifaria MC40-6 chromosome 3, complete sequencetranscriptional regulator, LysR family1e-0653.9
NC_018643:807405:810184810184811074891Alpha proteobacterium HIMB5 chromosome, complete genomeBacterial regulatory helix-turn-helix protein, lysR family,ligand-binding protein, LysR family2e-0653.9
NC_010170:1324758:135075613507561351655900Bordetella petrii, complete genometranscriptional regulator, LysR-family2e-0653.5
NC_014640:2693060:271221227122122713129918Achromobacter xylosoxidans A8 chromosome, complete genomeLysR family transcriptional regulator2e-0653.5
NC_013757:1343396:136046913604691361407939Geodermatophilus obscurus DSM 43160, complete genometranscriptional regulator, LysR family2e-0653.5
NC_013850:2685835:268920726892072690127921Klebsiella variicola At-22 chromosome, complete genometranscriptional regulator, LysR family2e-0653.5
NC_019973:6102442:612900761290076129996990Mesorhizobium australicum WSM2073, complete genometranscriptional regulator2e-0653.5
NC_003923:473743:474976474976475860885Staphylococcus aureus subsp. aureus MW2, complete genometranscription activator of glutamate synthase operon2e-0653.1
NC_017337:498688:501354501354502238885Staphylococcus aureus subsp. aureus ED133 chromosome, completetranscriptional regulator2e-0653.1
NC_004129:4434259:443815744381574439104948Pseudomonas fluorescens Pf-5, complete genometranscriptional regulator, LysR family2e-0653.1
NC_002952:494500:497576497576498460885Staphylococcus aureus subsp. aureus MRSA252, complete genomeLysR family regulatory protein2e-0653.1
NC_014532:2268078:229234622923462293248903Halomonas elongata DSM 2581, complete genometranscriptional regulator, LysR family2e-0653.1
NC_013592:3397304:340137534013753402277903Dickeya dadantii Ech586, complete genometranscriptional regulator, LysR family3e-0653.1
NC_017338:470993:473005473005473889885Staphylococcus aureus subsp. aureus JKD6159 chromosome, completetranscriptional activator of glutamate synthase operon3e-0652.8
NC_002928:3781657:3792240379224037932831044Bordetella parapertussis 12822, complete genomeputative LysR-family regulatory protein4e-0652.4
NC_013450:448054:450720450720451604885Staphylococcus aureus subsp. aureus ED98, complete genometranscriptional regulatory protein GltC4e-0652.4
NC_009632:522264:524930524930525814885Staphylococcus aureus subsp. aureus JH1 chromosome, completeLysR family transcriptional regulator4e-0652.4
NC_009487:522193:524859524859525743885Staphylococcus aureus subsp. aureus JH9 chromosome, completeLysR family transcriptional regulator4e-0652.4
NC_002758:511247:513913513913514797885Staphylococcus aureus subsp. aureus Mu50, complete genometranscription activator of glutamate synthase operon4e-0652.4
NC_002745:487500:489599489599490483885Staphylococcus aureus subsp. aureus N315, complete genometranscription activator of glutamate synthase operon4e-0652.4
NC_008542:1021848:104322410432241044144921Burkholderia cenocepacia HI2424 chromosome 1, complete sequencetranscriptional regulator, LysR family6e-0652
NC_008060:476861:498577498577499497921Burkholderia cenocepacia AU 1054 chromosome 1, complete sequencetranscriptional regulator, LysR family6e-0652
NC_010943:1332243:133691113369111337804894Stenotrophomonas maltophilia K279a, complete genomeputative LysR family transcriptional regulator5e-0652
NC_014972:480355:480355480355481275921Desulfobulbus propionicus DSM 2032 chromosome, complete genomeLysR family transcriptional regulator5e-0652
NC_012997:3651993:366218636621863663103918Teredinibacter turnerae T7901, complete genometranscriptional regulator, LysR family5e-0652
NC_010511:6756000:676493767649376765845909Methylobacterium sp. 4-46 chromosome, complete genomeLysR family transcriptional regulator6e-0651.6