Pre_GI: BLASTP Hits

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Query: NC_009439:4913767:4932480 Pseudomonas mendocina ymp, complete genome

Start: 4932480, End: 4933268, Length: 789

Host Lineage: Pseudomonas mendocina; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Soil and subsurface bacterium. Strain ymp was isolated as part of the Yucca Mountain Project from sediment in a surface holding pond of a drilling operation at the Nevada Test Site, NV, USA (the proposed site of the high-level nuclear repository). Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. Pseudomonas mendocina is a pentachlorophenol (PCP)-degrading bacterium was isolated from PCP-contaminated soil. It is able to act as a bioremediation agent without the accumulation of inhibitory toxic compounds.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_021150:68251:871178711787905789Azotobacter vinelandii CA6, complete genomezinc ABC transporter, permease protein2e-53209
NC_012560:68251:871178711787905789Azotobacter vinelandii DJ, complete genomezinc ABC transporter, permease protein2e-53209
CU928160:1978500:200732320073232008108786Escherichia coli IAI1 chromosome, complete genomezinc transporter subunit: membrane component of ABC superfamily9e-36150
NC_011741:1978500:200732320073232008108786Escherichia coli IAI1 chromosome, complete genomehigh-affinity zinc transporter membrane component9e-36150
NC_007384:1355060:135621713562171357002786Shigella sonnei Ss046, complete genomehypothetical protein9e-36150
NC_016822:1339058:133905813390581339843786Shigella sonnei 53G, complete genomehigh-affinity zinc transporter membrane protein9e-36150
NC_013361:2591829:262062026206202621405786Escherichia coli O26:H11 str. 11368 chromosome, complete genomehigh-affinity zinc transporter membrane protein8e-36150
NC_013364:2355298:238409023840902384875786Escherichia coli O111:H- str. 11128, complete genomezinc transporter subunit ZnuB8e-36150
NC_012913:280506:305824305824306609786Aggregatibacter aphrophilus NJ8700, complete genomehigh-affinity zinc uptake system membrane protein ZnuB5e-32138
NC_018868:2615822:261977026197702620567798Simiduia agarivorans SA1 = DSM 21679 chromosome, complete genomeABC zinc transporter permease ZnuB2e-30132
NC_004311:1096649:111542711154271116287861Brucella suis 1330 chromosome II, complete sequencezinc ABC transporter, permease protein1e-29130
NC_003318:183914:183100183100183954855Brucella melitensis 16M chromosome II, complete sequenceHIGH-AFFINITY ZINC UPTAKE SYSTEM MEMBRANE PROTEIN ZNUB9e-30130
NC_013118:1109610:112836611283661129226861Brucella microti CCM 4915 chromosome 2, complete genomezinc ABC transporter, permease protein9e-30130
NC_015858:1150446:116898011689801169840861Brucella pinnipedialis B2/94 chromosome chromosome 2, completezinc ABC transporter permease9e-30130
NC_006933:1051873:107053910705391071399861Brucella abortus biovar 1 str. 9-941 chromosome II, completeZnuB, zinc ABC transporter, permease protein9e-30130
NC_010104:1096081:111485811148581115718861Brucella canis ATCC 23365 chromosome II, complete sequence29 kDa membrane protein in psaA 5'region9e-30130
NC_007624:1046500:106529510652951066155861Brucella melitensis biovar Abortus 2308 chromosome II, completeABC transporter, family 3:Sodium:dicarboxylate symporter9e-30130
NC_010740:1051000:106979610697961070656861Brucella abortus S19 chromosome 2, complete sequenceABC transporter, family 39e-30130
NC_010167:1287000:130905613090561309916861Brucella suis ATCC 23445 chromosome II, complete sequencehypothetical protein9e-30130
NC_009668:1591290:161036716103671611188822Ochrobactrum anthropi ATCC 49188 chromosome 2, complete sequenceABC-3 protein2e-29129
NC_018644:137755:167803167803168675873Alpha proteobacterium HIMB59 chromosome, complete genomeABC3 family transporter1e-1893.6
NC_005295:845000:858634858634859434801Ehrlichia ruminantium str. Welgevonden, complete genomeputative ABC transporter, membrane-spanning protein7e-0961.2
NC_006832:825000:838511838511839311801Ehrlichia ruminantium str. Welgevonden, complete genomeHigh-affinity zinc uptake system membrane protein znuB7e-0961.2
NC_006831:821000:834396834396835196801Ehrlichia ruminantium str. Gardel, complete genomeHigh-affinity zinc uptake system membrane protein znuB7e-0961.2
NC_010547:98330:975469754698361816Cyanothece sp. ATCC 51142 chromosome linear, complete sequenceABC transporter permease protein9e-0960.8
NC_014248:4642149:466031746603174661186870Nostoc azollae 0708 chromosome, complete genomeABC-3 protein3e-0652.8