Pre_GI: BLASTP Hits

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Query: NC_009439:4913767:4928694 Pseudomonas mendocina ymp, complete genome

Start: 4928694, End: 4929944, Length: 1251

Host Lineage: Pseudomonas mendocina; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Soil and subsurface bacterium. Strain ymp was isolated as part of the Yucca Mountain Project from sediment in a surface holding pond of a drilling operation at the Nevada Test Site, NV, USA (the proposed site of the high-level nuclear repository). Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. Pseudomonas mendocina is a pentachlorophenol (PCP)-degrading bacterium was isolated from PCP-contaminated soil. It is able to act as a bioremediation agent without the accumulation of inhibitory toxic compounds.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015556:130437:1524651524651537151251Pseudomonas fulva 12-X chromosome, complete genomemajor facilitator superfamily MFS_14e-106385
NC_011883:1601552:1606838160683816080581221Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774,major facilitator superfamily MFS_11e-1584.7
NC_008686:1439328:1462601146260114638271227Paracoccus denitrificans PD1222 chromosome 1, complete sequencemajor facilitator superfamily MFS_19e-1375.1
NC_008245:66852:7096070960722251266Francisella tularensis subsp. tularensis FSC 198, complete genomemajor facilitator superfamily (MFS) tranport protein4e-1273.2
NC_006570:24636:7094470944722091266Francisella tularensis subsp. tularensis Schu 4, complete genomemajor facilitator superfamily (MFS) tranport protein4e-1273.2
NC_016933:66854:7096270962722271266Francisella tularensis TIGB03 chromosome, complete genomeAmpG permease4e-1273.2
NC_016937:66854:7096270962722271266Francisella tularensis subsp. tularensis TI0902 chromosome,AmpG permease4e-1273.2
NC_010677:96470:1427931427931440581266Francisella tularensis subsp. mediasiatica FSC147, complete genomepeptide-acetyl-coenzyme A transporter (PAT) family protein5e-1272.8
NC_009257:151737:1558451558451571101266Francisella tularensis subsp. tularensis WY96-3418 chromosome,major facilitator superfamily transporter5e-1272.8
NC_007880:1703346:1722622172262217238871266Francisella tularensis subsp. holarctica, complete genomemajor facilitator superfamily (MFS) tranport protein5e-1272.8
NC_009749:1699152:1718521171852117197861266Francisella tularensis subsp. holarctica FTA, complete genomemajor facilitator superfamily5e-1272.8
NC_008369:1702885:1722254172225417235191266Francisella tularensis subsp. holarctica OSU18, complete genomeMFS family major facilitator transporter5e-1272.8
NC_008601:1733940:1753261175326117545261266Francisella tularensis subsp. novicida U112, complete genomepeptide-acetyl-coenzyme A transporter (PAT) family protein4e-1272.8
NC_003112:364869:3675523675523688351284Neisseria meningitidis MC58, complete genomeAmpG-related protein9e-1168.6
NC_017516:364404:3671353671353683701236Neisseria meningitidis H44/76 chromosome, complete genomepermease, AmpG family9e-1168.6
NC_010336:996661:1042990104299010443631374Francisella philomiragia subsp. philomiragia ATCC 25017, completepeptide-acetyl-coenzyme A transporter (PAT) family protein1e-1068.2
NC_014307:3240430:3255731325573132570111281Ralstonia solanacearum CFBP2957 chromosome, complete genomemuropeptide transport protein (mfs family)1e-1068.2
NC_015696:517941:5644385644385658111374Francisella sp. TX077308 chromosome, complete genomeAmpG permease1e-1067.8
NC_014311:3348102:3350107335010733513871281Ralstonia solanacearum PSI07 chromosome, complete genomemuropeptide transport protein (MFS family)2e-1067.4
NC_020181:2714559:2714559271455927160341476Enterobacter aerogenes EA1509E, complete genomeAmpG permease3e-1066.6
NC_015663:2694373:2729743272974327312181476Enterobacter aerogenes KCTC 2190 chromosome, complete genomemuropeptide transporter3e-1066.6
NC_012881:478042:4951294951294963941266Desulfovibrio salexigens DSM 2638, complete genomemajor facilitator superfamily MFS_15e-1065.9
NC_005085:786851:8084848084848097611278Chromobacterium violaceum ATCC 12472, complete genomeMFS family, muropeptide transporter1e-0964.7
NC_017328:385552:4050334050334065081476Shigella flexneri 2002017 chromosome, complete genomeBeta-lactamase induction signal transducer AmpG3e-0963.5
NC_004741:366822:3869703869703884451476Shigella flexneri 2a str. 2457T, complete genomebeta-lactamase induction signal transducer AmpG3e-0963.5
NC_004337:367687:3871693871693886441476Shigella flexneri 2a str. 301, complete genomebeta-lactamase induction signal transducer AmpG3e-0963.5
NC_008258:401786:4248204248204262951476Shigella flexneri 5 str. 8401, complete genomeregulates beta-lactamase synthesis3e-0963.5
NC_015460:418826:4363514363514376221272Gallibacterium anatis UMN179 chromosome, complete genomemuropeptide transporter6e-0962.4
NC_017513:1845069:1857570185757018587301161Neisseria meningitidis G2136 chromosome, complete genomepermease, AmpG family9e-0962
NC_017223:51180:5118051180523911212Bordetella pertussis CS chromosome, complete genomemuropeptide transporter5e-0859.3
NC_008686:1439328:1460233146023314614201188Paracoccus denitrificans PD1222 chromosome 1, complete sequencemajor facilitator superfamily MFS_12e-0757.8
NC_011035:1564821:1579916157991615812681353Neisseria gonorrhoeae NCCP11945 chromosome, complete genomeAmpG protein3e-0757
NC_017511:1467090:1482752148275214841041353Neisseria gonorrhoeae TCDC-NG08107 chromosome, complete genomeAmpG protein3e-0757
NC_002946:1556000:1570641157064115719241284Neisseria gonorrhoeae FA 1090, complete genomeAmpG3e-0756.6
NC_017512:1824966:1840151184015118414341284Neisseria meningitidis WUE 2594, complete genomeputative AmpG-like permease8e-0755.5
NC_003116:2063500:2075985207598520772681284Neisseria meningitidis Z2491, complete genomeintegral membrane signal transducer protein8e-0755.5
NC_008767:1829500:1845076184507618463591284Neisseria meningitidis FAM18, complete genomeputative integral membrane signal transducer protein8e-0755.5
NC_017515:372487:3740563740563753391284Neisseria meningitidis M04-240196 chromosome, complete genomepermease, AmpG family9e-0755.1
NC_017518:2041282:2053116205311620543991284Neisseria meningitidis NZ-05/33 chromosome, complete genomepermease, AmpG family1e-0654.7
NC_017514:1885154:1898887189888719001701284Neisseria meningitidis M01-240149 chromosome, complete genomepermease, AmpG family1e-0654.7
NC_013016:1801000:1816298181629818175811284Neisseria meningitidis alpha14 chromosome, complete genomeAmpG-related permease1e-0654.7
NC_010120:1814592:1829845182984518311281284Neisseria meningitidis 053442, complete genomeMFS transporter, PAT family, beta-lactamase induction signal transducer AmpG1e-0654.7